myRT

myRT report for GCA_003194955.1_ASM319495v1

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Seq: QIUL01000011.1 Klebsiella pneumoniae strain SCPM-O-B-7851 NODE_11_length_149435_cov_24.859545, whole genome shotgun sequence (149435 bp)
Overview 1 RT 1: 32784-39637 bp Neighborhood of RT #1 [32784, 39654] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32784-33449 bp Feature: domain Description: INT_P4_C Location: 32889-33447 bp Feature: domain Description: INT_P4_C Location: 32889-33447 bp Feature: gene Location: 33710-34150 bp Feature: domain Description: Integrase_1 Location: 33716-33932 bp Feature: domain Description: Integrase_1 Location: 3371 6-33932 bp Feature: gene Location: 34207-36285 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34615-35059 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3461 5-35059 bp Feature: gene Location: 36285-38894 bp Feature: domain Description: FimD Location: 36342-38883 bp Feature: domain Description: FimD Location: 36342-38883 bp Feature: gene Location: 38926-39654 bp Feature: domain Description: FimC Location: 38974-39637 bp Feature: domain Description: FimC Location: 38974-39637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: QIUL01000079.1 Klebsiella pneumoniae strain SCPM-O-B-7851 NODE_79_length_2189_cov_51.496605, whole genome shotgun sequence (2189 bp)
Overview 1 RT 1: 87-2096 bp Neighborhood of RT #1 [87, 2096] RVT_N RVT-GII GIIM Feature: gene Location: 87-1580 bp Feature: domain Description: RVT_N Location: 132-375 bp Feature: domain Description: RVT_N Location: 132 -375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 0-1068 bp Feature: domain Description: GIIM Note: maturase Location: 1128-1356 bp Feature: domain Description: GIIM Note: maturase Location: 112 8-1356 bp Feature: gene Location: 1863-2096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)