myRT

myRT report for GCA_003195115.1_ASM319511v1

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Seq: QIUH01000011.1 Klebsiella pneumoniae strain SCPM-O-B-8391 NODE_11_length_125275_cov_11.1323, whole genome shotgun sequence (125275 bp)
Overview 1 RT 1: 98738-105582 bp Neighborhood of RT #1 [98738, 105839] AAA_15 RVT-Retrons HTH_23 Feature: gene Location: 98738-99043 bp Feature: gene Location: 99926-102202 bp Feature: domain Description: AAA_15 Location: 99959-100967 bp Feature: domain Description: AAA_1 5 Location: 99959-1 00967 bp Feature: gene Location: 102317-103417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102497-103031 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 02497-1 03031 bp Feature: gene Location: 104342-105190 bp Feature: gene Location: 105363-105839 bp Feature: domain Description: HTH_23 Location: 105441-105582 bp Feature: domain Description: HTH_23 Location: 1 05441 -1 05582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, HTH_23 (pfam13384)

Seq: QIUH01000018.1 Klebsiella pneumoniae strain SCPM-O-B-8391 NODE_18_length_96601_cov_11.5226, whole genome shotgun sequence (96601 bp)
Overview 1 RT 1: 24860-32029 bp Neighborhood of RT #1 [24860, 32046] EAL RVT-UG4 FimD FimC Feature: gene Location: 24860-25066 bp Feature: gene Location: 25156-26010 bp Feature: domain Description: EAL Location: 25840-25993 bp Feature: domain Description: EAL Location: 2 5840-2 5993 bp Feature: gene Location: 26647-28677 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 27055-27499 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 7055-2 7499 bp Feature: gene Location: 28677-31286 bp Feature: domain Description: FimD Location: 28734-31275 bp Feature: domain Description: FimD Location: 2 8734-312 75 bp Feature: gene Location: 31318-32046 bp Feature: domain Description: FimC Location: 31366-32029 bp Feature: domain Description: FimC Location: 31366-32 02 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EAL (smart00052), RVT-UG4, FimD (COG3188), FimC (COG3121)