myRT

myRT report for GCA_003195235.1_ASM319523v1

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Seq: QIUS01000001.1 Klebsiella pneumoniae strain WUSM_KP_108 NODE_1_length_520907_cov_23.7114, whole genome shotgun sequence (520907 bp)
Overview 1 RT 1: 235797-242650 bp Neighborhood of RT #1 [235797, 242667] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 235797-236462 bp Feature: domain Description: INT_P4_C Location: 235902-236460 bp Feature: domain Description: INT_P4_C Location: 235902-236460 bp Feature: gene Location: 236723-237163 bp Feature: domain Description: Integrase_1 Location: 236729-236945 bp Feature: domain Description: Integrase_1 Location: 236729-236945 bp Feature: gene Location: 237220-239298 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 237628-238072 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 237628-238072 bp Feature: gene Location: 239298-241907 bp Feature: domain Description: FimD Location: 239355-241896 bp Feature: domain Description: FimD Location: 239355-241 896 bp Feature: gene Location: 241939-242667 bp Feature: domain Description: FimC Location: 241972-242650 bp Feature: domain Description: FimC Location: 241 972-242650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: QIUS01000039.1 Klebsiella pneumoniae strain WUSM_KP_108 NODE_39_length_38277_cov_24.1244, whole genome shotgun sequence (38277 bp)
Overview 1 RT 1: 8890-13794 bp Neighborhood of RT #1 [8890, 13799] YccC PRK10016 RVT-GII dacD Feature: gene Location: 8890-9948 bp Feature: domain Description: YccC Location: 8896-9934 bp Feature: domain Description: YccC Location: 8896-9934 bp Feature: gene Location: 10047-10520 bp Feature: domain Description: PRK10016 Location: 10050-10509 bp Feature: domain Description: PRK10016 Location: 10050-10509 bp Feature: gene Location: 10602-12110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11004-11718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11004-11718 bp Feature: gene Location: 12164-12397 bp Feature: gene Location: 12630-13799 bp Feature: domain Description: dacD Location: 12639-13794 bp Feature: domain Description: dacD Location: 12 639-13794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397)

Seq: QIUS01000043.1 Klebsiella pneumoniae strain WUSM_KP_108 NODE_43_length_34364_cov_25.1014, whole genome shotgun sequence (34364 bp)
Overview 1 RT 1: 28157-32645 bp Neighborhood of RT #1 [28157, 32809] PRK09692 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 28157-28579 bp Feature: domain Description: PRK09692 Location: 28160-28541 bp Feature: domain Description: PRK09692 Location: 28160-28541 bp Feature: gene Location: 28581-29222 bp Feature: gene Location: 29648-30613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29756-30353 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29756-3 03 53 bp Feature: gene Location: 30591-32183 bp Feature: domain Description: COG3950 Location: 30771-31992 bp Feature: domain Description: COG3 950 Location: 3 0771-3 1992 bp Feature: gene Location: 32180-32809 bp Feature: domain Description: TIGR02646 Location: 32270-32645 bp Feature: domain Description: TIGR02646 Location: 3 2270-3 2645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: QIUS01000082.1 Klebsiella pneumoniae strain WUSM_KP_108 NODE_82_length_1740_cov_206.669, whole genome shotgun sequence (1740 bp)
Overview 1 RT 1: 1-1290 bp Neighborhood of RT #1 [1, 1682] RVT-GII Feature: gene Location: 1-198 bp Feature: gene Location: 273-1682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 600-1290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 600-1290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII