myRT

myRT report for GCA_003195815.1_ASM319581v1

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Seq: QIWJ01000026.1 Klebsiella pneumoniae strain WUSM_KP_65 NODE_26_length_79623_cov_29.2427, whole genome shotgun sequence (79623 bp)
Overview 1 RT 1: 31974-38827 bp Neighborhood of RT #1 [31974, 38844] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31974-32639 bp Feature: domain Description: INT_P4_C Location: 32079-32637 bp Feature: domain Description: INT_P4_C Location: 32079-32637 bp Feature: gene Location: 32900-33340 bp Feature: domain Description: Integrase_1 Location: 32906-33122 bp Feature: domain Description: Integrase_1 Location: 32906-331 22 bp Feature: gene Location: 33397-35475 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33805-34249 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33805-34249 bp Feature: gene Location: 35475-38084 bp Feature: domain Description: FimD Location: 35532-38073 bp Feature: domain Description: FimD Location: 35532-38073 bp Feature: gene Location: 38116-38844 bp Feature: domain Description: FimC Location: 38164-38827 bp Feature: domain Description: FimC Location: 381 64-38827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: QIWJ01000039.1 Klebsiella pneumoniae strain WUSM_KP_65 NODE_39_length_42658_cov_51.4318, whole genome shotgun sequence (42658 bp)
Overview 1 RT 1: 2-3900 bp Neighborhood of RT #1 [2, 3902] YjcC RVT-GII COG2159 Feature: gene Location: 2-1030 bp Feature: domain Description: YjcC Location: 194-1007 bp Feature: domain Description: YjcC Location: 194-1007 bp Feature: gene Location: 1100-1273 bp Feature: gene Location: 1805-1996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1922-1988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 2 -1988 bp Feature: gene Location: 2521-2745 bp Feature: gene Location: 3135-3902 bp Feature: domain Description: COG2159 Location: 3312-3900 bp Feature: domain Description: COG2 159 Location: 3312 -3900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjcC (COG4943), RVT-GII, COG2159 (Predicted metal-dependent hydrolase, TIM-barrel fold )

Seq: QIWJ01000090.1 Klebsiella pneumoniae strain WUSM_KP_65 NODE_90_length_1913_cov_152.838, whole genome shotgun sequence (1913 bp)
Overview 1 RT 1: 2-1463 bp Neighborhood of RT #1 [2, 1855] RVT-GII Feature: gene Location: 2-214 bp Feature: gene Location: 368-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773 -1463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII