myRT

myRT report for GCA_003201665.1_ASM320166v1

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Seq: QJJV01000001.1 Paraburkholderia tropica strain SIr-6563 Ga0215843_101, whole genome shotgun sequence (663995 bp)
Overview 1 RT 1: 352456-360238 bp Neighborhood of RT #1 [352456, 360273] PRK05731 PRK12861 RVT_N RVT-GII YkfC HNHc RNase_Sa Barstar Feature: gene Location: 352456-353469 bp Feature: domain Description: PRK05731 Location: 352462-353458 bp Feature: domain Description: PRK05731 Location: 352462-353458 bp Feature: gene Location: 353536-355947 bp Feature: domain Description: PRK12861 Location: 353671-355942 bp Feature: domain Description: PRK1 2861 Location: 353671 -355942 bp Feature: gene Location: 357378-358982 bp Feature: RT Description: RVT_N Location: 357381-357579 bp Feature: RT Description: RVT_N Location: 357381 -357579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357624-358272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357624-358272 bp Feature: domain Description: YkfC Location: 358407-358575 bp Feature: domain Description: YkfC Location: 358407-358575 bp Feature: domain Description: HNHc Note: nucleases Location: 358773-358941 bp Feature: domain Description: HNHc Note: nucleases Location: 358773-358941 bp Feature: gene Location: 359313-359684 bp Feature: domain Description: RNase_Sa Location: 359403-359676 bp Feature: domain Description: RNase_Sa Location: 359403-359676 bp Feature: gene Location: 359701-360273 bp Feature: domain Description: Barstar Location: 359992-360238 bp Feature: domain Description: Barstar Location: 359992-360238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05731 (thiamine monophosphate kinase; Provisional), PRK12861 (malic enzyme; Reviewed), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), RNase_Sa (cd00607), Barstar (pfam01337)

Seq: QJJV01000015.1 Paraburkholderia tropica strain SIr-6563 Ga0215843_115, whole genome shotgun sequence (218320 bp)
Overview 1 RT 1: 93514-101145 bp Neighborhood of RT #1 [93514, 101174] degP_htrA_DO DUF836 RVT-GII GIIM HNHc PRK05433 PRK10861 PRK10861 Feature: gene Location: 93514-95049 bp Feature: domain Description: degP_htrA_DO Location: 93619-95017 bp Feature: domain Description: degP_htrA_DO Location: 93619-95017 bp Feature: gene Location: 95074-95418 bp Feature: domain Description: DUF836 Location: 95155-95371 bp Feature: domain Description: DUF836 Location: 95155-95371 bp Feature: gene Location: 96980-98284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96983-97571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96983-97571 bp Feature: domain Description: GIIM Note: maturase Location: 97622-97856 bp Feature: domain Description: GIIM Note: maturase Location: 9762 2 -97856 bp Feature: domain Description: HNHc Note: nucleases Location: 98075-98240 bp Feature: domain Description: HNHc Note: nucleases Location: 98075-982 40 bp Feature: gene Location: 98463-100256 bp Feature: domain Description: PRK05433 Location: 98466-100251 bp Feature: domain Description: PRK05433 Location: 98466-1002 51 bp Feature: gene Location: 100278-101174 bp Feature: domain Description: PRK10861 Location: 100287-100815 bp Feature: domain Description: PRK10861 Location: 1002 87-100815 bp Feature: domain Description: PRK10861 Location: 101013-101145 bp Feature: domain Description: PRK10861 Location: 101013-101145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10861 (signal peptidase I), degP_htrA_DO (TIGR02037), DUF836 (pfam05768), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05433 (GTP-binding protein LepA; Provisional)

Seq: QJJV01000047.1 Paraburkholderia tropica strain SIr-6563 Ga0215843_147, whole genome shotgun sequence (34206 bp)
Overview 1 RT 1: 564-3518 bp Neighborhood of RT #1 [564, 3518] HTH_Tnp_1 Tra5 RVT-Retrons HipB Feature: gene Location: 564-824 bp Feature: domain Description: HTH_Tnp_1 Location: 570-774 bp Feature: domain Description: HTH_Tnp_1 Location: 570-774 bp Feature: gene Location: 863-1687 bp Feature: domain Description: Tra5 Location: 875-1649 bp Feature: domain Description: Tra5 Location: 875-1649 bp Feature: gene Location: 1947-2954 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2091-2670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2091-2670 bp Feature: gene Location: 2923-3228 bp Feature: domain Description: HipB Location: 2932-3187 bp Feature: domain Description: HipB Location: 293 2-3 187 bp Feature: gene Location: 3261-3518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HipB (COG1396), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: QJJV01000073.1 Paraburkholderia tropica strain SIr-6563 Ga0215843_173, whole genome shotgun sequence (2289 bp)
Overview 1 RT 1: 1-1962 bp Neighborhood of RT #1 [1, 2198] RVT-GII GIIM Feature: gene Location: 1-270 bp Feature: gene Location: 666-2198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1677 bp Feature: domain Description: GIIM Note: maturase Location: 1773-1962 bp Feature: domain Description: GIIM Note: maturase Location: 1773-1962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)