myRT

myRT report for GCA_003202235.1_ASM320223v1

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Seq: MASU01000002.1 Prauserella sp. YIM 121212 BA062_c02, whole genome shotgun sequence (729726 bp)
Overview 1 RT 1: 664851-674598 bp Neighborhood of RT #1 [664851, 674630] PolY_like dnaE2 RVT-Retrons YjbI TNT Feature: gene Location: 664851-666467 bp Feature: domain Description: PolY_like Location: 664893-665832 bp Feature: domain Description: PolY_like Location: 664893-665832 bp Feature: gene Location: 666612-669968 bp Feature: domain Description: dnaE2 Location: 666804-669966 bp Feature: domain Description: dnaE2 Location: 666804-669966 bp Feature: gene Location: 670359-671666 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 670803-671439 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 670803-671 439 bp Feature: gene Location: 671694-672287 bp Feature: domain Description: YjbI Location: 671715-672231 bp Feature: domain Description: YjbI Location: 671 71 5-672231 bp Feature: gene Location: 672312-674630 bp Feature: domain Description: TNT Location: 674346-674598 bp Feature: domain Description: TNT Location: 674346-674598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), dnaE2 (PRK05672), RVT-Retrons, YjbI (COG2346), TNT (pfam14021)

Seq: MASU01000012.1 Prauserella sp. YIM 121212 BA062_c12, whole genome shotgun sequence (339319 bp)
Overview 1 RT 1: 150791-154417 bp 2 RT 2: 174829-178026 bp 3 RT 3: 266018-272337 bp Neighborhood of RT #1 [150791, 154506] degP_htrA_DO methyltran_FxLD RVT-GII GIIM methyltran_FxLD Neighborhood of RT #2 [174829, 178026] YfmG RVT-CRISPR-like QueC Neighborhood of RT #3 [266018, 272345] COG5421 COG5421 IS285 RVT-GII GIIM Transposase_mut PRK07396 Feature: gene Location: 150791-151663 bp Feature: domain Description: degP_htrA_DO Location: 150830-151652 bp Feature: domain Description: degP_htrA_DO Location: 150830-151652 bp Feature: gene Location: 151734-152000 bp Feature: domain Description: methyltran_FxLD Location: 151737-151980 bp Feature: domain Description: methyltran_FxLD Location: 151737-151980 bp Feature: gene Location: 152136-153575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152457-153150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 457-153150 bp Feature: domain Description: GIIM Note: maturase Location: 153225-153453 bp Feature: domain Description: GIIM Note: maturase Location: 1532 2 5-153453 bp Feature: gene Location: 153617-153793 bp Feature: gene Location: 154090-154506 bp Feature: domain Description: methyltran_FxLD Location: 154123-154417 bp Feature: domain Description: methyltran_FxLD Location: 15412 3-154417 bp Feature: gene Location: 174829-175290 bp Feature: gene Location: 175287-175844 bp Feature: domain Description: YfmG Location: 175413-175839 bp Feature: domain Description: YfmG Location: 175413-175839 bp Feature: gene Location: 175850-176629 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 176051-176588 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 176051-176588 bp Feature: gene Location: 176831-177535 bp Feature: domain Description: QueC Location: 176867-177527 bp Feature: domain Description: QueC Location: 176867-17752 7 bp Feature: gene Location: 177538-178026 bp Feature: gene Location: 266018-267532 bp Feature: domain Description: COG5421 Location: 266561-266849 bp Feature: domain Description: COG542 1 Location: 2 66561-2 66849 bp Feature: domain Description: COG5421 Location: 267068-267377 bp Feature: domain Description: COG542 1 Location: 2 67068-2 67377 bp Feature: gene Location: 267791-268057 bp Feature: domain Description: IS285 Location: 267797-268037 bp Feature: domain Description: IS2 85 Location: 2 67797-2 68037 bp Feature: gene Location: 268205-269701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268589-269270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 68589-2 692 70 bp Feature: domain Description: GIIM Note: maturase Location: 269342-269576 bp Feature: domain Description: GIIM Note: maturase Location: 2 69342 -2 69576 bp Feature: gene Location: 270155-271069 bp Feature: domain Description: Transposase_mut Location: 270215-270995 bp Feature: domain Description: Transposase_mut Location: 2 702 15-2 70995 bp Feature: gene Location: 271896-272345 bp Feature: domain Description: PRK07396 Location: 271905-272337 bp Feature: domain Description: PRK07396 Location: 2 71905-2 72 337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT degP_htrA_DO (TIGR02037), methyltran_FxLD (TIGR04364), RVT-GII, GIIM (pfam08388), YfmG (COG1262), RVT-CRISPR, QueC (pfam06508), COG5421 (Transposase ), IS285 (COG3328), Transposase_mut (pfam00872)
PRK07396 (dihydroxynaphthoic acid synthetase; Validated)

Seq: MASU01000031.1 Prauserella sp. YIM 121212 BA062_c31, whole genome shotgun sequence (25296 bp)
Overview 1 RT 1: 51-3260 bp Neighborhood of RT #1 [51, 3260] Transposase_mut RVT-CRISPR-like QueC Feature: gene Location: 51-1289 bp Feature: domain Description: Transposase_mut Location: 81-1188 bp Feature: domain Description: Transposase_mut Location: 81-1188 bp Feature: gene Location: 1376-1780 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1496-1712 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1496-1712 bp Feature: gene Location: 2071-2835 bp Feature: domain Description: QueC Location: 2167-2827 bp Feature: domain Description: QueC Location: 2167-2827 bp Feature: gene Location: 2778-3260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-CRISPR, QueC (pfam06508)

Seq: MASU01000033.1 Prauserella sp. YIM 121212 BA062_c33, whole genome shotgun sequence (35628 bp)
Overview 1 RT 1: 10506-18703 bp Neighborhood of RT #1 [10506, 18705] GloA GloA RVT-GII GIIM COG4584 PRK06526 Feature: gene Location: 10506-11432 bp Feature: domain Description: GloA Location: 10548-10959 bp Feature: domain Description: GloA Location: 1054 8-10959 bp Feature: domain Description: GloA Location: 10992-11418 bp Feature: domain Description: GloA Location: 10992-114 18 bp Feature: gene Location: 11690-12667 bp Feature: gene Location: 13712-15196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14054-14744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 054 -14 74 4 bp Feature: domain Description: GIIM Note: maturase Location: 14813-15023 bp Feature: domain Description: GIIM Note: maturase Location: 14 813-15023 bp Feature: gene Location: 16661-17905 bp Feature: domain Description: COG4584 Location: 16664-17474 bp Feature: domain Description: COG4 584 Location: 16664 -174 74 bp Feature: gene Location: 17905-18705 bp Feature: domain Description: PRK06526 Location: 17944-18703 bp Feature: domain Description: PRK06526 Location: 1794 4 -18703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GloA (COG0346), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), PRK06526 (transposase; Provisional)

Seq: MASU01000037.1 Prauserella sp. YIM 121212 BA062_c37, whole genome shotgun sequence (9662 bp)
Overview 1 RT 1: 2-1392 bp Neighborhood of RT #1 [2, 1392] RVT-CRISPR-like YfmG Feature: gene Location: 2-346 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 83-308 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 83-308 bp Feature: gene Location: 350-907 bp Feature: domain Description: YfmG Location: 494-902 bp Feature: domain Description: YfmG Location: 494-902 bp Feature: gene Location: 931-1392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, YfmG (COG1262)