myRT

myRT report for GCA_003202955.1_ASM320295v1

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Seq: BFBV01000001.1 Clostridiales bacterium Choco116 DNA, Choco116-draft-1, whole genome shotgun sequence (2881169 bp)
Overview 1 RT 1: 320652-324348 bp 2 RT 2: 1571931-1577781 bp 3 RT 3: 2467570-2471857 bp Neighborhood of RT #1 [320652, 324395] FN3 RVT-DGRs Avd_like Neighborhood of RT #2 [1571931, 1578071] DUF3801 VirD4 RVT-GII SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Neighborhood of RT #3 [2467570, 2471952] Avd_like RVT-DGRs ChiA1_BD ChiA1_BD Feature: gene Location: 320652-320810 bp Feature: gene Location: 320844-322547 bp Feature: domain Description: FN3 Location: 321669-321933 bp Feature: domain Description: FN3 Location: 321 669-321 933 bp Feature: gene Location: 322415-323677 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 322604-323291 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 322604-323291 bp Feature: gene Location: 323849-324139 bp Feature: gene Location: 323997-324395 bp Feature: domain Description: Avd_like Location: 324009-324348 bp Feature: domain Description: Avd_like Location: 324009-324348 bp Feature: gene Location: 1571931-1572401 bp Feature: domain Description: DUF3801 Location: 1572000-1572372 bp Feature: domain Description: DUF3801 Location: 1 572000-1 572372 bp Feature: gene Location: 1572521-1573174 bp Feature: domain Description: VirD4 Location: 1572620-1573136 bp Feature: domain Description: VirD4 Location: 1 572620-1 5731 36 bp Feature: gene Location: 1573833-1575740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1574163-1574907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5741 63-1 574907 bp Feature: gene Location: 1575887-1576117 bp Feature: gene Location: 1576191-1578071 bp Feature: domain Description: SR_TndX_transposase Location: 1576215-1576623 bp Feature: domain Description: SR_TndX_transposase Location: 1 57621 5-1 576623 bp Feature: domain Description: Recombinase Location: 1576722-1577085 bp Feature: domain Description: Recombinase Location: 1 576722-1 577085 bp Feature: domain Description: Zn_ribbon_recom Location: 1577127-1577310 bp Feature: domain Description: Zn_ribbon_recom Location: 1 5771 27-1 57731 0 bp Feature: domain Description: DUF4368 Location: 1577595-1577781 bp Feature: domain Description: DUF4368 Location: 1 577595-1 577781 bp Feature: gene Location: 2467570-2467767 bp Feature: gene Location: 2467736-2468089 bp Feature: domain Description: Avd_like Location: 2467784-2468072 bp Feature: domain Description: Avd_like Location: 2467784-2468072 bp Feature: gene Location: 2468442-2469665 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2468715-2469357 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 246871 5-2469357 bp Feature: gene Location: 2470118-2471428 bp Feature: gene Location: 2471425-2471952 bp Feature: domain Description: ChiA1_BD Location: 2471593-2471719 bp Feature: domain Description: ChiA1 _BD Location: 2471 593-2471 71 9 bp Feature: domain Description: ChiA1_BD Location: 2471779-2471857 bp Feature: domain Description: ChiA1 _BD Location: 2471 779-2471 857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), RVT-DGRs, Avd_like (cd16376), DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)
ChiA1_BD (cd12214)

Seq: BFBV01000002.1 Clostridiales bacterium Choco116 DNA, Choco116-draft-2, whole genome shotgun sequence (496215 bp)
Overview 1 RT 1: 8134-12421 bp Neighborhood of RT #1 [8134, 12516] Avd_like RVT-DGRs ChiA1_BD ChiA1_BD Feature: gene Location: 8134-8331 bp Feature: gene Location: 8360-8653 bp Feature: domain Description: Avd_like Location: 8363-8636 bp Feature: domain Description: Avd_like Location: 8363-8636 bp Feature: gene Location: 9006-10229 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9279-9921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 92 79-992 1 bp Feature: gene Location: 10682-11992 bp Feature: gene Location: 11989-12516 bp Feature: domain Description: ChiA1_BD Location: 12157-12283 bp Feature: domain Description: ChiA1_BD Location: 12 157-12 2 83 bp Feature: domain Description: ChiA1_BD Location: 12343-12421 bp Feature: domain Description: ChiA1_BD Location: 12 343-12 42 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), Avd_like (cd16376), RVT-DGRs

Seq: BFBV01000003.1 Clostridiales bacterium Choco116 DNA, Choco116-draft-3, whole genome shotgun sequence (479514 bp)
Overview 1 RT 1: 112882-117178 bp 2 RT 2: 205791-214042 bp Neighborhood of RT #1 [112882, 117273] Avd_like RVT-DGRs ChiA1_BD ChiA1_BD Neighborhood of RT #2 [205791, 214047] SLH SLH YgaE RVT-Retrons MATE_MepA_like DUF386 Feature: gene Location: 112882-113079 bp Feature: gene Location: 113048-113401 bp Feature: domain Description: Avd_like Location: 113096-113384 bp Feature: domain Description: Avd_like Location: 113 096-113 3 84 bp Feature: gene Location: 113754-114977 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114027-114669 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114027-114669 bp Feature: gene Location: 115430-116749 bp Feature: gene Location: 116746-117273 bp Feature: domain Description: ChiA1_BD Location: 116914-117040 bp Feature: domain Description: ChiA1_BD Location: 116914-117040 bp Feature: domain Description: ChiA1_BD Location: 117100-117178 bp Feature: domain Description: ChiA1_BD Location: 117100-117178 bp Feature: gene Location: 205791-209279 bp Feature: domain Description: SLH Location: 208788-208908 bp Feature: domain Description: SLH Location: 208788-208908 bp Feature: domain Description: SLH Location: 209112-209241 bp Feature: domain Description: SLH Location: 209112-209241 bp Feature: gene Location: 209427-210347 bp Feature: domain Description: YgaE Location: 209454-210234 bp Feature: domain Description: YgaE Location: 209454-21023 4 bp Feature: gene Location: 210605-211690 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 210860-211412 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 210860-211412 bp Feature: gene Location: 211869-213278 bp Feature: domain Description: MATE_MepA_like Location: 211908-213204 bp Feature: domain Description: MATE_MepA_like Location: 211908-213 204 bp Feature: gene Location: 213601-214047 bp Feature: domain Description: DUF386 Location: 213604-214042 bp Feature: domain Description: DUF3 86 Location: 213 604-214042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, ChiA1_BD (cd12214), SLH (pfam00395), YgaE (COG4129), RVT-Retrons, MATE_MepA_like (cd13143), DUF386 (pfam04074)