myRT

myRT report for GCA_003202975.1_ASM320297v1

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Seq: BGJZ01000034.1 Pseudomonas syringae pv. actinidiae MAFF212206 DNA, PG1731_01_a_contig34, whole genome shotgun sequence (3651 bp)
Overview 1 RT 1: 417-3560 bp Neighborhood of RT #1 [417, 3649] RVT-Retrons DUF4263 Feature: gene Location: 417-2216 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 546-1173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 546-1 1 73 bp Feature: gene Location: 2449-2613 bp Feature: gene Location: 2660-3649 bp Feature: domain Description: DUF4263 Location: 3092-3560 bp Feature: domain Description: DUF4263 Location: 3092-3560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4263 (pfam14082)

Seq: BGJZ01000037.1 Pseudomonas syringae pv. actinidiae MAFF212206 DNA, PG1731_01_a_contig37, whole genome shotgun sequence (70139 bp)
Overview 1 RT 1: 1-4903 bp Neighborhood of RT #1 [1, 4944] RVT-GII GIIM GT35_Glycogen_Phosphorylase pro_imino_pep_1 Feature: gene Location: 1-1011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-583 bp Feature: domain Description: GIIM Note: maturase Location: 628-838 bp Feature: domain Description: GIIM Note: maturase Location: 62 8-838 bp Feature: gene Location: 1243-3693 bp Feature: domain Description: GT35_Glycogen_Phosphorylase Location: 1297-3682 bp Feature: domain Description: GT35_Glycogen_Phosphorylase Location: 12 97-3682 bp Feature: gene Location: 3973-4944 bp Feature: domain Description: pro_imino_pep_1 Location: 4000-4903 bp Feature: domain Description: pro_imino_pep_1 Location: 4000-4903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GT35_Glycogen_Phosphorylase (cd04300), pro_imino_pep_1 (TIGR01249)

Seq: BGJZ01000092.1 Pseudomonas syringae pv. actinidiae MAFF212206 DNA, PG1731_01_a_contig92, whole genome shotgun sequence (13763 bp)
Overview 1 RT 1: 3793-11307 bp Neighborhood of RT #1 [3793, 11336] DUF4007 RVT-GII InsE TnpB_IS66 Feature: gene Location: 3793-7251 bp Feature: gene Location: 7244-8149 bp Feature: domain Description: DUF4007 Location: 7277-8096 bp Feature: domain Description: DUF4007 Location: 7277-8096 bp Feature: gene Location: 8728-10524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9442-10132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9442-1013 2 bp Feature: gene Location: 10648-11004 bp Feature: domain Description: InsE Location: 10687-10828 bp Feature: domain Description: InsE Location: 10687-10828 bp Feature: gene Location: 11001-11336 bp Feature: domain Description: TnpB_IS66 Location: 11019-11307 bp Feature: domain Description: TnpB_IS66 Location: 11019-113 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4007 (pfam13182), RVT-GII, InsE (COG2963), TnpB_IS66 (pfam05717)

Seq: BGJZ01000242.1 Pseudomonas syringae pv. actinidiae MAFF212206 DNA, PG1731_01_a_contig242, whole genome shotgun sequence (7368 bp)
Overview 1 RT 1: 267-2945 bp Neighborhood of RT #1 [267, 2962] RVT-UG17 SLATT_5 HTH_XRE HTH_XRE Feature: gene Location: 267-1631 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 495-1098 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4 95-1098 bp Feature: gene Location: 1628-2251 bp Feature: domain Description: SLATT_5 Location: 1694-2222 bp Feature: domain Description: SLATT_5 Location: 1694 -2222 bp Feature: gene Location: 2495-2962 bp Feature: domain Description: HTH_XRE Location: 2588-2672 bp Feature: domain Description: HTH_XRE Location: 2588-2672 bp Feature: domain Description: HTH_XRE Location: 2879-2945 bp Feature: domain Description: HTH_XRE Location: 2879-294 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), HTH_XRE (smart00530)

Seq: BGJZ01000427.1 Pseudomonas syringae pv. actinidiae MAFF212206 DNA, PG1731_01_a_contig427, whole genome shotgun sequence (872 bp)
Overview 1 RT 1: 3-792 bp Neighborhood of RT #1 [3, 869] RVT-GII Feature: gene Location: 3-869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177-792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177-792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BGJZ01000449.1 Pseudomonas syringae pv. actinidiae MAFF212206 DNA, PG1731_01_a_contig449, whole genome shotgun sequence (320 bp)
Overview 1 RT 1: 1-91 bp Neighborhood of RT #1 [1, 186] RVT-UG3 Feature: gene Location: 1-186 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4-91 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4-91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3

Seq: BGJZ01000453.1 Pseudomonas syringae pv. actinidiae MAFF212206 DNA, PG1731_01_a_contig453, whole genome shotgun sequence (587 bp)
Overview 1 RT 1: 216-585 bp Neighborhood of RT #1 [216, 584] RVT-GII Feature: gene Location: 216-584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BGJZ01000458.1 Pseudomonas syringae pv. actinidiae MAFF212206 DNA, PG1731_01_a_contig458, whole genome shotgun sequence (199 bp)
Overview 1 RT 1: 1-199 bp Neighborhood of RT #1 [1, 198] RVT-GII Feature: gene Location: 1-198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII