myRT

myRT report for GCA_003202995.1_ASM320299v1

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Seq: BGKA01000009.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig09, whole genome shotgun sequence (4869 bp)
Overview 1 RT 1: 1629-3901 bp Neighborhood of RT #1 [1629, 4653] UvrD_C RVT-UG9 Feature: gene Location: 1629-2573 bp Feature: gene Location: 2934-3524 bp Feature: domain Description: UvrD_C Location: 3258-3453 bp Feature: domain Description: UvrD_C Location: 3258-3453 bp Feature: gene Location: 3622-4653 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3628-3901 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3628-3901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: BGKA01000019.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig19, whole genome shotgun sequence (48695 bp)
Overview 1 RT 1: 61-5970 bp Neighborhood of RT #1 [61, 5970] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 61-1284 bp Feature: domain Description: COG3666 Location: 103-544 bp Feature: domain Description: COG3666 Location: 103-544 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1021-1243 bp Feature: domain Description: DDE_Tnp_1_6 Location: 102 1-12 43 bp Feature: gene Location: 1535-1696 bp Feature: gene Location: 1782-3491 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1935-2532 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1935-2 532 bp Feature: gene Location: 3935-5353 bp Feature: domain Description: ComA-like_MBL-fold Location: 4484-4970 bp Feature: domain Description: ComA-like_MBL-fold Location: 4484-4970 bp Feature: gene Location: 5707-5970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: BGKA01000040.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig40, whole genome shotgun sequence (32569 bp)
Overview 1 RT 1: 108-2352 bp Neighborhood of RT #1 [108, 2352] RVT-GII GIIM Feature: gene Location: 108-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 12-969 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: gene Location: 1410-1577 bp Feature: gene Location: 1636-2352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BGKA01000068.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig68, whole genome shotgun sequence (139630 bp)
Overview 1 RT 1: 88-2044 bp Neighborhood of RT #1 [88, 2121] RVT-GII GIIM YhhQ Feature: gene Location: 88-1371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-94 3 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: gene Location: 1440-1655 bp Feature: gene Location: 1654-2121 bp Feature: domain Description: YhhQ Location: 1729-2044 bp Feature: domain Description: YhhQ Location: 1729-204 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhhQ (COG1738)

Seq: BGKA01000155.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig155, whole genome shotgun sequence (37541 bp)
Overview 1 RT 1: 30369-36305 bp Neighborhood of RT #1 [30369, 36340] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30369-31457 bp Feature: domain Description: modC_ABC Location: 30384-31449 bp Feature: domain Description: modC_ABC Location: 30384-31449 bp Feature: gene Location: 31546-32601 bp Feature: domain Description: Top1 Location: 31579-32593 bp Feature: domain Description: Top1 Location: 315 79-325 93 bp Feature: gene Location: 33432-35267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33693-34506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33693-345 06 bp Feature: domain Description: Intron_maturas2 Location: 34602-34917 bp Feature: domain Description: Intron_maturas2 Location: 34602-34917 bp Feature: domain Description: HNHc Note: nucleases Location: 35040-35205 bp Feature: domain Description: HNHc Note: nucleases Location: 35 040-35 205 bp Feature: gene Location: 35507-35698 bp Feature: gene Location: 35705-36340 bp Feature: domain Description: DUF2625 Location: 35717-36305 bp Feature: domain Description: DUF2625 Location: 35 717-36305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: BGKA01000216.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig216, whole genome shotgun sequence (680 bp)
Overview 1 RT 1: 2-677 bp Neighborhood of RT #1 [2, 679] RVT-GII Feature: gene Location: 2-679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170-677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170-6 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BGKA01000222.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig222, whole genome shotgun sequence (379 bp)
Overview 1 RT 1: 3-375 bp Neighborhood of RT #1 [3, 377] RVT-GII GIIM Feature: gene Location: 3-377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-204 bp Feature: domain Description: GIIM Note: maturase Location: 261-375 bp Feature: domain Description: GIIM Note: maturase Location: 261-37 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BGKA01000265.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig265, whole genome shotgun sequence (270 bp)
Overview 1 RT 1: 1-139 bp Neighborhood of RT #1 [1, 267] RVT-GII Feature: gene Location: 1-267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BGKA01000309.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig309, whole genome shotgun sequence (196 bp)
Overview 1 RT 1: 56-155 bp Neighborhood of RT #1 [56, 193] RVT-GII Feature: gene Location: 56-193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62-155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62-155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BGKA01000318.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig318, whole genome shotgun sequence (198 bp)
Overview 1 RT 1: 3-198 bp Neighborhood of RT #1 [3, 197] RVT-GII Feature: gene Location: 3-197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57-198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57-198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BGKA01000326.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig326, whole genome shotgun sequence (264 bp)
Overview 1 RT 1: 3-204 bp Neighborhood of RT #1 [3, 263] RVT-GII Feature: gene Location: 3-263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BGKA01000331.1 Pseudomonas syringae pv. actinidiae MAFF212211 DNA, PG1731_05_a_contig331, whole genome shotgun sequence (202 bp)
Overview 1 RT 1: 2-194 bp Neighborhood of RT #1 [2, 199] RVT-GII Feature: gene Location: 2-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII