myRT

myRT report for GCA_003203495.1_ASM320349v1

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Seq: BGNF01000036.1 Vibrio harveyi GAN1709 DNA, contig00036, whole genome shotgun sequence (177123 bp)
Overview 1 RT 1: 106783-112397 bp Neighborhood of RT #1 [106783, 112399] MiaE RVT-UG17 SLATT_5 MiaE Feature: gene Location: 106783-107589 bp Feature: domain Description: MiaE Location: 106840-107566 bp Feature: domain Description: MiaE Location: 1 06840-1 07566 bp Feature: gene Location: 107803-109926 bp Feature: gene Location: 109994-111325 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 110222-110825 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 1 0222-1 1 0825 bp Feature: gene Location: 111327-111977 bp Feature: domain Description: SLATT_5 Location: 111333-111927 bp Feature: domain Description: SLATT_5 Location: 1 1 1 333-1 1 1 927 bp Feature: gene Location: 112247-112399 bp Feature: domain Description: MiaE Location: 112277-112397 bp Feature: domain Description: MiaE Location: 1 1 2277-1 1 2397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MiaE (pfam06175), RVT-UG17, SLATT_5 (pfam18160)

Seq: BGNF01000084.1 Vibrio harveyi GAN1709 DNA, contig00084, whole genome shotgun sequence (171784 bp)
Overview 1 RT 1: 147894-152256 bp Neighborhood of RT #1 [147894, 152256] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 147894-148562 bp Feature: domain Description: TIGR02646 Location: 147960-148386 bp Feature: domain Description: TIGR02 646 Location: 147960-148386 bp Feature: gene Location: 148559-150220 bp Feature: domain Description: COG3950 Location: 148781-150077 bp Feature: domain Description: COG3950 Location: 148781-150077 bp Feature: gene Location: 150217-151155 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150319-150919 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150319-150919 bp Feature: gene Location: 151467-151619 bp Feature: gene Location: 151837-152256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons

Seq: BGNF01000100.1 Vibrio harveyi GAN1709 DNA, contig00100, whole genome shotgun sequence (9701 bp)
Overview 1 RT 1: 7010-9443 bp Neighborhood of RT #1 [7010, 9502] RVT-DGRs Avd_like Feature: gene Location: 7010-7501 bp Feature: gene Location: 7514-7732 bp Feature: gene Location: 7802-9106 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8012-8711 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8012-8711 bp Feature: gene Location: 9086-9502 bp Feature: domain Description: Avd_like Location: 9119-9443 bp Feature: domain Description: Avd_like Location: 9119-9443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: BGNF01000187.1 Vibrio harveyi GAN1709 DNA, contig00187, whole genome shotgun sequence (2233 bp)
Overview 1 RT 1: 137-1469 bp Neighborhood of RT #1 [137, 1693] RVT_N RVT-GII GIIM Feature: gene Location: 137-1693 bp Feature: domain Description: RVT_N Location: 269-512 bp Feature: domain Description: RVT_N Location: 269-512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557-1184 bp Feature: domain Description: GIIM Note: maturase Location: 1250-1469 bp Feature: domain Description: GIIM Note: maturase Location: 1250-14 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)