myRT

myRT report for GCA_003204715.1_ASM320471v1

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Seq: QJPZ01000146.1 Serratia marcescens strain 1257 NODE_180_length_33712_cov_30.766850, whole genome shotgun sequence (33850 bp)
Overview 1 RT 1: 12939-17241 bp Neighborhood of RT #1 [12939, 17378] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 12939-13169 bp Feature: domain Description: umuC Location: 12942-13167 bp Feature: domain Description: umuC Location: 1 2942-1 31 67 bp Feature: gene Location: 13169-13843 bp Feature: domain Description: PRK10276 Location: 13421-13829 bp Feature: domain Description: PRK1 0276 Location: 1 3421 -1 3829 bp Feature: gene Location: 13997-15484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14402-15092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4402-1 5092 bp Feature: gene Location: 15733-16704 bp Feature: domain Description: StbA Location: 15736-16681 bp Feature: domain Description: StbA Location: 1 5736-1 6681 bp Feature: gene Location: 16707-17378 bp Feature: domain Description: Plasmid_stab_B Location: 16722-16929 bp Feature: domain Description: Plasmid_stab_B Location: 1 6722-1 6929 bp Feature: domain Description: Plasmid_stab_B Location: 17034-17241 bp Feature: domain Description: Plasmid_stab_B Location: 1 7034-1 7241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: QJPZ01000048.1 Serratia marcescens strain 1257 NODE_49_length_2408_cov_32.382477, whole genome shotgun sequence (2546 bp)
Overview 1 RT 1: 229-2483 bp Neighborhood of RT #1 [229, 2483] RVT-GII GIIM Feature: gene Location: 229-1752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502 -12 34 bp Feature: domain Description: GIIM Note: maturase Location: 1309-1507 bp Feature: domain Description: GIIM Note: maturase Location: 1309-1507 bp Feature: gene Location: 2046-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QJPZ01000487.1 Serratia marcescens strain 1257 NODE_652_length_38196_cov_16.797100, whole genome shotgun sequence (38334 bp)
Overview 1 RT 1: 26839-31013 bp Neighborhood of RT #1 [26839, 31030] Ogr_Delta RVT-Retrons DUF2207 PRK09692 Feature: gene Location: 26839-27195 bp Feature: domain Description: Ogr_Delta Location: 26863-26998 bp Feature: domain Description: Ogr_Delta Location: 26863 -26998 bp Feature: gene Location: 27421-27585 bp Feature: gene Location: 27911-29098 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28061-28640 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28061-28640 bp Feature: gene Location: 29092-29808 bp Feature: domain Description: DUF2207 Location: 29101-29494 bp Feature: domain Description: DUF2207 Location: 29101-29494 bp Feature: gene Location: 29810-31030 bp Feature: domain Description: PRK09692 Location: 29870-31013 bp Feature: domain Description: PRK09692 Location: 29870-3 1013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), RVT-Retrons, DUF2207 (pfam09972), PRK09692 (Integrase; provisional)