myRT

myRT report for GCA_003204755.1_ASM320475v1

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Seq: QJQB01000147.1 Serratia marcescens strain 1283 NODE_179_length_27394_cov_29.148354, whole genome shotgun sequence (27556 bp)
Overview 1 RT 1: 12963-17265 bp Neighborhood of RT #1 [12963, 17402] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 12963-13193 bp Feature: domain Description: umuC Location: 12966-13191 bp Feature: domain Description: umuC Location: 1 2966-1 31 91 bp Feature: gene Location: 13193-13867 bp Feature: domain Description: PRK10276 Location: 13445-13853 bp Feature: domain Description: PRK1 0276 Location: 1 3445-1 3853 bp Feature: gene Location: 14021-15508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14426-15116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4426-1 51 1 6 bp Feature: gene Location: 15757-16728 bp Feature: domain Description: StbA Location: 15760-16705 bp Feature: domain Description: StbA Location: 1 5760-1 6705 bp Feature: gene Location: 16731-17402 bp Feature: domain Description: Plasmid_stab_B Location: 16746-16953 bp Feature: domain Description: Plasmid_stab_B Location: 1 6746-1 6953 bp Feature: domain Description: Plasmid_stab_B Location: 17058-17265 bp Feature: domain Description: Plasmid_stab_B Location: 1 7058-1 7265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: QJQB01000046.1 Serratia marcescens strain 1283 NODE_46_length_2432_cov_34.278370, whole genome shotgun sequence (2594 bp)
Overview 1 RT 1: 253-2507 bp Neighborhood of RT #1 [253, 2507] RVT-GII GIIM Feature: gene Location: 253-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526-1258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 6-12 58 bp Feature: domain Description: GIIM Note: maturase Location: 1333-1531 bp Feature: domain Description: GIIM Note: maturase Location: 1333-1531 bp Feature: gene Location: 2070-2507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QJQB01000520.1 Serratia marcescens strain 1283 NODE_622_length_17511_cov_16.656958, whole genome shotgun sequence (17673 bp)
Overview 1 RT 1: 2670-6628 bp Neighborhood of RT #1 [2670, 6825] PRK09692 DUF2207 RVT-Retrons Ogr_Delta Feature: gene Location: 2670-3854 bp Feature: domain Description: PRK09692 Location: 2688-3837 bp Feature: domain Description: PRK09692 Location: 2688-3 83 7 bp Feature: gene Location: 3856-4572 bp Feature: domain Description: DUF2207 Location: 3865-4258 bp Feature: domain Description: DUF2207 Location: 3 865-4258 bp Feature: gene Location: 4566-5834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4797-5376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4797-53 76 bp Feature: gene Location: 6079-6243 bp Feature: gene Location: 6469-6825 bp Feature: domain Description: Ogr_Delta Location: 6493-6628 bp Feature: domain Description: Ogr_Delta Location: 6493 -6628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), DUF2207 (pfam09972), RVT-Retrons, Ogr_Delta (pfam04606)