myRT

myRT report for GCA_003204835.1_ASM320483v1

Download annotations/find similar RTs

Seq: QJQG01000032.1 Serratia marcescens strain 1056 NODE_32_length_35035_cov_51.9284, whole genome shotgun sequence (35035 bp)
Overview 1 RT 1: 12931-17233 bp Neighborhood of RT #1 [12931, 17370] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 12931-13161 bp Feature: domain Description: umuC Location: 12934-13159 bp Feature: domain Description: umuC Location: 1 2934-1 31 59 bp Feature: gene Location: 13161-13835 bp Feature: domain Description: PRK10276 Location: 13413-13821 bp Feature: domain Description: PRK1 0276 Location: 1 341 3-1 3821 bp Feature: gene Location: 13989-15476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14394-15084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4394-1 5084 bp Feature: gene Location: 15725-16696 bp Feature: domain Description: StbA Location: 15728-16673 bp Feature: domain Description: StbA Location: 1 5728-1 6673 bp Feature: gene Location: 16699-17370 bp Feature: domain Description: Plasmid_stab_B Location: 16714-16921 bp Feature: domain Description: Plasmid_stab_B Location: 1 671 4-1 6921 bp Feature: domain Description: Plasmid_stab_B Location: 17026-17233 bp Feature: domain Description: Plasmid_stab_B Location: 1 7026-1 7233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: QJQG01000064.1 Serratia marcescens strain 1056 NODE_64_length_4279_cov_60.6883, whole genome shotgun sequence (4279 bp)
Overview 1 RT 1: 143-4180 bp Neighborhood of RT #1 [143, 4215] DDE_Tnp_1_5 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 143-1111 bp Feature: domain Description: DDE_Tnp_1_5 Location: 245-578 bp Feature: domain Description: DDE_Tnp_1_5 Location: 2 45-578 bp Feature: gene Location: 1352-1777 bp Feature: domain Description: PHA02517 Location: 1376-1712 bp Feature: domain Description: PHA02 517 Location: 1376-1712 bp Feature: gene Location: 2369-3892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2642-3374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 642 -3374 bp Feature: domain Description: GIIM Note: maturase Location: 3449-3647 bp Feature: domain Description: GIIM Note: maturase Location: 3449-3647 bp Feature: gene Location: 4057-4215 bp Feature: domain Description: PHA02517 Location: 4060-4180 bp Feature: domain Description: PHA02 517 Location: 4060-4180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1_5 (pfam13737), RVT-GII, GIIM (pfam08388)