myRT

myRT report for GCA_003205245.1_ASM320524v1

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Seq: QJRK01000104.1 Pseudomonas sp. MB-090624 NODE_104_length_1853_cov_170.527231, whole genome shotgun sequence (1853 bp)
Overview 1 RT 1: 54-1794 bp Neighborhood of RT #1 [54, 1794] RVT-GII GIIM Feature: gene Location: 54-1310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246-861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246-861 bp Feature: domain Description: GIIM Note: maturase Location: 918-1137 bp Feature: domain Description: GIIM Note: maturase Location: 91 8-1 1 37 bp Feature: gene Location: 1225-1794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QJRK01000031.1 Pseudomonas sp. MB-090624 NODE_31_length_84424_cov_27.284850, whole genome shotgun sequence (84424 bp)
Overview 1 RT 1: 13474-22210 bp Neighborhood of RT #1 [13474, 22242] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 13474-14145 bp Feature: domain Description: NTP_transferase_like_1 Location: 13480-14119 bp Feature: domain Description: NTP_transferase_like_1 Location: 13480-14119 bp Feature: gene Location: 14142-15161 bp Feature: domain Description: COG3178 Location: 14223-15144 bp Feature: domain Description: COG3178 Location: 142 2 3-15144 bp Feature: gene Location: 16285-17991 bp Feature: RT Description: RVT_N Location: 16342-16585 bp Feature: RT Description: RVT_N Location: 16342 -16585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16630-17263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16630-172 63 bp Feature: domain Description: YkfC Location: 17464-17653 bp Feature: domain Description: YkfC Location: 17464-17653 bp Feature: domain Description: HNH Note: nucleases Location: 17803-17941 bp Feature: domain Description: HNH Note: nucleases Location: 17803-17941 bp Feature: gene Location: 18174-20942 bp Feature: domain Description: LptD Location: 18465-20925 bp Feature: domain Description: LptD Location: 18465-2 092 5 bp Feature: gene Location: 20917-22242 bp Feature: domain Description: PRK10770 Location: 20998-22210 bp Feature: domain Description: PRK10770 Location: 2 0998-2 2 2 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: QJRK01000004.1 Pseudomonas sp. MB-090624 NODE_4_length_159961_cov_27.916845, whole genome shotgun sequence (159961 bp)
Overview 1 RT 1: 152865-158653 bp Neighborhood of RT #1 [152865, 158661] fmt def RVT_N RVT-GII YkfC HNH Smf Feature: gene Location: 152865-153797 bp Feature: domain Description: fmt Location: 152868-153780 bp Feature: domain Description: fmt Location: 152868-153 780 bp Feature: gene Location: 153858-154364 bp Feature: domain Description: def Location: 153861-154347 bp Feature: domain Description: def Location: 153 861-1543 47 bp Feature: gene Location: 154473-156179 bp Feature: RT Description: RVT_N Location: 154530-154773 bp Feature: RT Description: RVT_N Location: 15453 0-154773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154818-155454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154818-155454 bp Feature: domain Description: YkfC Location: 155661-155814 bp Feature: domain Description: YkfC Location: 155661-155814 bp Feature: domain Description: HNH Note: nucleases Location: 155991-156129 bp Feature: domain Description: HNH Note: nucleases Location: 155991-156129 bp Feature: gene Location: 157304-157435 bp Feature: gene Location: 157534-158661 bp Feature: domain Description: Smf Location: 157600-158653 bp Feature: domain Description: Smf Location: 157600-158653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fmt (TIGR00460), def (PRK00150), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), Smf (COG0758)