myRT

myRT report for GCA_003205895.1_ASM320589v1

Download annotations/find similar RTs

Seq: QJTY01000212.1 Pseudomonas syringae pv. pisi strain 203 NODE_212_length_680_cov_0.813743_ID_8128, whole genome shotgun sequence (680 bp)
Overview 1 RT 1: 66-606 bp Neighborhood of RT #1 [66, 677] RVT-CRISPR-like Feature: gene Location: 66-383 bp Feature: gene Location: 402-677 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 468-606 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 468-606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: QJTY01000055.1 Pseudomonas syringae pv. pisi strain 203 NODE_55_length_22678_cov_79.2369_ID_7814, whole genome shotgun sequence (22678 bp)
Overview 1 RT 1: 791-6427 bp Neighborhood of RT #1 [791, 6453] MATE_like_2 PaaK RVT-GII InsE TnpB_IS66 Feature: gene Location: 791-2167 bp Feature: domain Description: MATE_like_2 Location: 815-2090 bp Feature: domain Description: MATE_like_2 Location: 815-2 090 bp Feature: gene Location: 2249-3436 bp Feature: domain Description: PaaK Location: 2360-3290 bp Feature: domain Description: PaaK Location: 2 360-32 90 bp Feature: gene Location: 3801-5567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4485-5175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4485-5175 bp Feature: gene Location: 5723-6112 bp Feature: domain Description: InsE Location: 5765-6050 bp Feature: domain Description: InsE Location: 5765-6050 bp Feature: gene Location: 6109-6453 bp Feature: domain Description: TnpB_IS66 Location: 6136-6427 bp Feature: domain Description: TnpB_IS66 Location: 6136-642 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_like_2 (cd13149), PaaK (COG1541), RVT-GII, InsE (COG2963), TnpB_IS66 (pfam05717)

Seq: QJTY01000065.1 Pseudomonas syringae pv. pisi strain 203 NODE_65_length_11767_cov_69.0576_ID_7834, whole genome shotgun sequence (11767 bp)
Overview 1 RT 1: 136-5842 bp Neighborhood of RT #1 [136, 6069] RVT-Retrons RVT-Retrons Prim-Pol primase_Cterm Feature: gene Location: 136-321 bp Feature: gene Location: 404-1855 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 407-848 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 407-848 bp Feature: gene Location: 1867-2250 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2002-2245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2002-2245 bp Feature: gene Location: 2586-3047 bp Feature: gene Location: 3376-6069 bp Feature: domain Description: Prim-Pol Location: 3412-3994 bp Feature: domain Description: Prim-Pol Location: 3 412-3 994 bp Feature: domain Description: primase_Cterm Location: 5197-5842 bp Feature: domain Description: primase_Cterm Location: 5197-5842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Prim-Pol (smart00943), primase_Cterm (TIGR01613)

Seq: QJTY01000098.1 Pseudomonas syringae pv. pisi strain 203 NODE_98_length_1550_cov_473.959_ID_7900, whole genome shotgun sequence (1550 bp)
Overview 1 RT 1: 59-1157 bp Neighborhood of RT #1 [59, 1549] RVT-GII Feature: gene Location: 59-1549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 67-1157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII