myRT

myRT report for GCA_003208175.1_ASM320817v1

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Seq: QKMR01000003.1 Ruminiclostridium sufflavum DSM 19573 Ga0056032_scaffold00003.3, whole genome shotgun sequence (284539 bp)
Overview 1 RT 1: 13224-19351 bp Neighborhood of RT #1 [13224, 19461] GATase1_PfpI_3 DUF3852 RVT-GII HNHc TonB Feature: gene Location: 13224-13862 bp Feature: domain Description: GATase1_PfpI_3 Location: 13236-13761 bp Feature: domain Description: GATase1 _PfpI_3 Location: 1 3236-1 3761 bp Feature: gene Location: 13959-14300 bp Feature: domain Description: DUF3852 Location: 13968-14292 bp Feature: domain Description: DUF3852 Location: 1 3968-1 4292 bp Feature: gene Location: 14419-16392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14737-15472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4737-1 5472 bp Feature: domain Description: HNHc Note: nucleases Location: 16081-16219 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6081 -1 621 9 bp Feature: gene Location: 17114-18853 bp Feature: gene Location: 18916-19461 bp Feature: domain Description: TonB Location: 18943-19351 bp Feature: domain Description: TonB Location: 1 8943-1 9351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase1_PfpI_3 (cd03140), DUF3852 (pfam12963), RVT-GII, HNHc (smart00507), TonB (COG0810)

Seq: QKMR01000017.1 Ruminiclostridium sufflavum DSM 19573 Ga0056032_scaffold00017.17, whole genome shotgun sequence (97650 bp)
Overview 1 RT 1: 84799-89746 bp Neighborhood of RT #1 [84799, 89925] YodL SpoVG RVT-GII Intron_maturas2 HNHc Peptidase_A24 pilus_cpaB Feature: gene Location: 84799-85359 bp Feature: domain Description: YodL Location: 85036-85321 bp Feature: domain Description: YodL Location: 85036-8532 1 bp Feature: gene Location: 85382-85753 bp Feature: domain Description: SpoVG Location: 85436-85667 bp Feature: domain Description: SpoVG Location: 85436-85667 bp Feature: gene Location: 86512-88395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86833-87667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86833-87667 bp Feature: domain Description: Intron_maturas2 Location: 87742-88072 bp Feature: domain Description: Intron_maturas2 Location: 87742 -88072 bp Feature: domain Description: HNHc Note: nucleases Location: 88213-88366 bp Feature: domain Description: HNHc Note: nucleases Location: 882 13-88366 bp Feature: gene Location: 88617-89072 bp Feature: domain Description: Peptidase_A24 Location: 88650-88932 bp Feature: domain Description: Peptidase_A2 4 Location: 88650-88932 bp Feature: gene Location: 89059-89925 bp Feature: domain Description: pilus_cpaB Location: 89164-89746 bp Feature: domain Description: pilus_cpaB Location: 89164-89746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), SpoVG (pfam04026), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Peptidase_A24 (pfam01478), pilus_cpaB (TIGR03177)

Seq: QKMR01000036.1 Ruminiclostridium sufflavum DSM 19573 Ga0056032_scaffold00036.36, whole genome shotgun sequence (14804 bp)
Overview 1 RT 1: 9151-14468 bp Neighborhood of RT #1 [9151, 14479] DnaG DUF3991 Toprim_2 RVT-GII Intron_maturas2 HNHc VirD4 Feature: gene Location: 9151-10554 bp Feature: domain Description: DnaG Location: 9328-9406 bp Feature: domain Description: DnaG Location: 93 28-9406 bp Feature: domain Description: DUF3991 Location: 9508-9748 bp Feature: domain Description: DUF3 991 Location: 9508-9748 bp Feature: domain Description: Toprim_2 Location: 9772-10045 bp Feature: domain Description: Toprim_2 Location: 9772-10045 bp Feature: gene Location: 10609-11310 bp Feature: gene Location: 11883-13712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12159-12999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12159-12999 bp Feature: domain Description: Intron_maturas2 Location: 13071-13410 bp Feature: domain Description: Intron_maturas2 Location: 13 071-13 410 bp Feature: domain Description: HNHc Note: nucleases Location: 13542-13695 bp Feature: domain Description: HNHc Note: nucleases Location: 13 542-13 695 bp Feature: gene Location: 13952-14479 bp Feature: domain Description: VirD4 Location: 14048-14468 bp Feature: domain Description: VirD4 Location: 14048-14468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), DnaG (COG0358), DUF3991 (pfam13154), Toprim_2 (pfam13155)

Seq: QKMR01000046.1 Ruminiclostridium sufflavum DSM 19573 Ga0056032_scaffold00046.46, whole genome shotgun sequence (2754 bp)
Overview 1 RT 1: 250-2481 bp Neighborhood of RT #1 [250, 2615] RVT-GII cas_Csn1 Feature: gene Location: 250-426 bp Feature: gene Location: 438-707 bp Feature: gene Location: 765-2615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1077-1821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1077-1821 bp Feature: domain Description: cas_Csn1 Location: 2298-2481 bp Feature: domain Description: cas_Csn1 Location: 2298-24 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, cas_Csn1 (TIGR01865)