myRT

myRT report for GCA_003217635.1_ASM321763v1

Download annotations/find similar RTs

Seq: QJVE01000106.1 Arthrobacter stackebrandtii strain CCM 2783 NODE_106_length_3053_cov_2.14785, whole genome shotgun sequence (3053 bp)
Overview 1 RT 1: 3-3011 bp Neighborhood of RT #1 [3, 3052] PRK14997 RVT-GII GIIM EAL Feature: gene Location: 3-545 bp Feature: domain Description: PRK14997 Location: 6-534 bp Feature: domain Description: PRK1 4997 Location: 6-534 bp Feature: gene Location: 605-826 bp Feature: gene Location: 1315-2736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672-2287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 672-2287 bp Feature: domain Description: GIIM Note: maturase Location: 2344-2569 bp Feature: domain Description: GIIM Note: maturase Location: 2344-2569 bp Feature: gene Location: 2825-3052 bp Feature: domain Description: EAL Location: 2831-3011 bp Feature: domain Description: EAL Location: 2831 -301 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), EAL (smart00052), PRK14997 (LysR family transcriptional regulator; Provisional)

Seq: QJVE01000014.1 Arthrobacter stackebrandtii strain CCM 2783 NODE_14_length_121130_cov_177.192, whole genome shotgun sequence (121130 bp)
Overview 1 RT 1: 50568-57536 bp Neighborhood of RT #1 [50568, 57547] PGMB-YQAB-SF ATH1 RVT-Retrons MoxR COG3552 Feature: gene Location: 50568-51299 bp Feature: domain Description: PGMB-YQAB-SF Location: 50610-51213 bp Feature: domain Description: PGMB-YQAB-SF Location: 50610-512 13 bp Feature: gene Location: 51414-53702 bp Feature: domain Description: ATH1 Location: 51447-53658 bp Feature: domain Description: ATH1 Location: 51447-53658 bp Feature: gene Location: 53752-55353 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54505-55126 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54505-5512 6 bp Feature: gene Location: 55514-56395 bp Feature: domain Description: MoxR Location: 55544-56303 bp Feature: domain Description: MoxR Location: 55544-56303 bp Feature: gene Location: 56399-57547 bp Feature: domain Description: COG3552 Location: 56468-57536 bp Feature: domain Description: COG3552 Location: 56468-57536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGMB-YQAB-SF (TIGR02009), ATH1 (COG1554), RVT-Retrons, MoxR (COG0714), COG3552 (CoxE;Uncharacterized conserved protein, contains von Willebrand factor type A (vWA) domain )

Seq: QJVE01000045.1 Arthrobacter stackebrandtii strain CCM 2783 NODE_45_length_4676_cov_3.45119, whole genome shotgun sequence (4676 bp)
Overview 1 RT 1: 1-2831 bp Neighborhood of RT #1 [1, 2831] RVT-GII GIIM Feature: gene Location: 1-237 bp Feature: gene Location: 763-2112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1660 bp Feature: domain Description: GIIM Note: maturase Location: 1717-1930 bp Feature: domain Description: GIIM Note: maturase Location: 1717-193 0 bp Feature: gene Location: 2289-2501 bp Feature: gene Location: 2613-2831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QJVE01000560.1 Arthrobacter stackebrandtii strain CCM 2783 NODE_564_length_1679_cov_2.52372, whole genome shotgun sequence (1679 bp)
Overview 1 RT 1: 1-1667 bp Neighborhood of RT #1 [1, 1678] RVT_N RVT-GII Feature: gene Location: 1-168 bp Feature: gene Location: 498-626 bp Feature: gene Location: 896-1678 bp Feature: RT Description: RVT_N Location: 953-1190 bp Feature: RT Description: RVT_N Location: 953-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1241-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124 1-1667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: QJVE01000719.1 Arthrobacter stackebrandtii strain CCM 2783 NODE_725_length_1497_cov_1.27746, whole genome shotgun sequence (1497 bp)
Overview 1 RT 1: 1-1495 bp Neighborhood of RT #1 [1, 1495] RVT-GII GIIM HNHc Feature: gene Location: 1-1023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-301 bp Feature: domain Description: GIIM Note: maturase Location: 355-586 bp Feature: domain Description: GIIM Note: maturase Location: 35 5 -5 86 bp Feature: domain Description: HNHc Note: nucleases Location: 820-976 bp Feature: domain Description: HNHc Note: nucleases Location: 820-976 bp Feature: gene Location: 1190-1495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QJVE01000007.1 Arthrobacter stackebrandtii strain CCM 2783 NODE_7_length_215830_cov_183.025, whole genome shotgun sequence (215830 bp)
Overview 1 RT 1: 69917-74575 bp Neighborhood of RT #1 [69917, 74575] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 69917-70297 bp Feature: gene Location: 70865-71995 bp Feature: domain Description: PHA02517 Location: 71105-71948 bp Feature: domain Description: PHA02517 Location: 71105-71948 bp Feature: gene Location: 71943-73427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72264-72954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7226 4-72954 bp Feature: domain Description: GIIM Note: maturase Location: 73023-73257 bp Feature: domain Description: GIIM Note: maturase Location: 73023-73257 bp Feature: gene Location: 73969-74352 bp Feature: domain Description: InsE Location: 73978-74272 bp Feature: domain Description: InsE Location: 73978-74272 bp Feature: gene Location: 74351-74575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)