myRT

myRT report for GCA_003218495.1_ASM321849v1

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Seq: QHNS01000092.1 Verrucomicrobia bacterium isolate AV70 14_1009_13_30cm_scaffold_26699_curated, whole genome shotgun sequence (3142 bp)
Overview 1 RT 1: 198-3099 bp Neighborhood of RT #1 [198, 3140] RVT_N RVT-GII GIIM PBP1_ABC_uncharacterized_transporter Feature: gene Location: 198-1859 bp Feature: domain Description: RVT_N Location: 243-486 bp Feature: domain Description: RVT_N Location: 243-486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531 -1 1 67 bp Feature: domain Description: GIIM Note: maturase Location: 1218-1452 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 8-1 452 bp Feature: gene Location: 2250-3140 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 2253-3099 bp Feature: domain Description: PBP1 _ABC_uncharacterized_transporter Location: 2253-3099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PBP1_ABC_uncharacterized_transporter

Seq: QHNS01000244.1 Verrucomicrobia bacterium isolate AV70 14_1009_13_30cm_scaffold_41675_curated, whole genome shotgun sequence (5030 bp)
Overview 1 RT 1: 1084-4109 bp Neighborhood of RT #1 [1084, 4109] SLATT_5 RVT-UG21 AmpC Feature: gene Location: 1084-1377 bp Feature: gene Location: 1546-1965 bp Feature: domain Description: SLATT_5 Location: 1585-1942 bp Feature: domain Description: SLATT_5 Location: 1585-1942 bp Feature: gene Location: 1971-3128 bp Feature: RT Description: RVT-UG21 Note: UG21 RT Location: 1977-2373 bp Feature: RT Description: RVT-UG2 1 Note: UG2 1 RT Location: 1977-2 373 bp Feature: gene Location: 3252-3632 bp Feature: domain Description: AmpC Location: 3258-3483 bp Feature: domain Description: AmpC Location: 32 58-3483 bp Feature: gene Location: 3846-4109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG21, AmpC (COG1680)

Seq: QHNS01000434.1 Verrucomicrobia bacterium isolate AV70 14_1009_13_30cm_scaffold_91074_curated, whole genome shotgun sequence (3103 bp)
Overview 1 RT 1: 1-2433 bp Neighborhood of RT #1 [1, 2433] RVT-GII GIIM Feature: gene Location: 1-264 bp Feature: gene Location: 701-2077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025-1700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025-1700 bp Feature: domain Description: GIIM Note: maturase Location: 1778-1985 bp Feature: domain Description: GIIM Note: maturase Location: 1778-1985 bp Feature: gene Location: 2158-2433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)