myRT

myRT report for GCA_003219345.1_ASM321934v1

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Seq: QHOP01000010.1 Verrucomicrobia bacterium isolate AV5 14_0919_12_20cm_scaffold_21812_curated, whole genome shotgun sequence (7073 bp)
Overview 1 RT 1: 1328-5105 bp Neighborhood of RT #1 [1328, 7072] NHL_like_1 NHL-2_like NHL-2_like NHL_like_1 NHL_like_1 HsdR RVT-UNC Feature: gene Location: 1328-3523 bp Feature: domain Description: NHL_like_1 Location: 1394-2069 bp Feature: domain Description: NHL_like_1 Location: 1 394-2069 bp Feature: domain Description: NHL-2_like Location: 2072-2150 bp Feature: domain Description: NHL-2_like Location: 2072-21 50 bp Feature: domain Description: NHL-2_like Location: 2189-2345 bp Feature: domain Description: NHL-2_like Location: 21 89-2345 bp Feature: domain Description: NHL_like_1 Location: 2354-2834 bp Feature: domain Description: NHL_like_1 Location: 2354-2834 bp Feature: domain Description: NHL_like_1 Location: 2834-3272 bp Feature: domain Description: NHL_like_1 Location: 2834-3272 bp Feature: gene Location: 3611-4171 bp Feature: domain Description: HsdR Location: 3617-4118 bp Feature: domain Description: HsdR Location: 361 7-41 1 8 bp Feature: gene Location: 4232-7072 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4649-5105 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4649-51 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL_like_1 (cd14953), NHL-2_like (cd14951), HsdR (COG4096), RVT-UG1/RVT-DGRs/RVT-UG10/RVT-UG25(RVT-UNC)

Seq: QHOP01000355.1 Verrucomicrobia bacterium isolate AV5 14_0919_12_20cm_scaffold_26862_curated, whole genome shotgun sequence (8134 bp)
Overview 1 RT 1: 2-3601 bp Neighborhood of RT #1 [2, 3612] RVT-GII GIIM PmoA XerC Feature: gene Location: 2-772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-42 8 bp Feature: domain Description: GIIM Note: maturase Location: 503-710 bp Feature: domain Description: GIIM Note: maturase Location: 503-710 bp Feature: gene Location: 920-2131 bp Feature: domain Description: PmoA Location: 1262-2096 bp Feature: domain Description: PmoA Location: 12 62 -2 096 bp Feature: gene Location: 2482-3612 bp Feature: domain Description: XerC Location: 2755-3601 bp Feature: domain Description: XerC Location: 2 755-3601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PmoA (pfam14100), XerC (COG4973)

Seq: QHOP01000044.1 Verrucomicrobia bacterium isolate AV5 14_0919_12_20cm_scaffold_4247_curated, whole genome shotgun sequence (25977 bp)
Overview 1 RT 1: 23782-25808 bp Neighborhood of RT #1 [23782, 25975] RVT-GII Feature: gene Location: 23782-24039 bp Feature: gene Location: 24489-24674 bp Feature: gene Location: 24791-25975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25145-25808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25145-25808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII