myRT

myRT report for GCA_003220255.1_ASM322025v1

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Seq: QHRV01000529.1 Candidatus Rokubacteria bacterium isolate AR6 14_1009_16_40cm_scaffold_109162_e_343.2_curated, whole genome shotgun sequence (3345 bp)
Overview 1 RT 1: 3-3151 bp Neighborhood of RT #1 [3, 3240] MIP DoxD RVT-GII GIIM Feature: gene Location: 3-740 bp Feature: domain Description: MIP Location: 75-639 bp Feature: domain Description: MIP Location: 75-639 bp Feature: gene Location: 766-1368 bp Feature: domain Description: DoxD Location: 1018-1315 bp Feature: domain Description: DoxD Location: 1 01 8-1 31 5 bp Feature: gene Location: 1921-3240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2209-2869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2209-2869 bp Feature: domain Description: GIIM Note: maturase Location: 2938-3151 bp Feature: domain Description: GIIM Note: maturase Location: 2938-31 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MIP (TIGR00861), DoxD (pfam04173)

Seq: QHRV01000673.1 Candidatus Rokubacteria bacterium isolate AR6 14_1009_16_40cm_scaffold_149233_curated, whole genome shotgun sequence (3651 bp)
Overview 1 RT 1: 3-1500 bp Neighborhood of RT #1 [3, 2207] RVT-GII HTH_17 PinE Feature: gene Location: 3-167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-168 bp Feature: gene Location: 205-2247 bp Feature: domain Description: HTH_17 Location: 2035-2122 bp Feature: domain Description: HTH_17 Location: 2 035-2 12 2 bp Feature: gene Location: 891-2207 bp Feature: domain Description: PinE Location: 939-1500 bp Feature: domain Description: PinE Location: 939-1500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII, PinE (COG1961)

Seq: QHRV01000836.1 Candidatus Rokubacteria bacterium isolate AR6 14_1009_16_40cm_scaffold_216420_curated, whole genome shotgun sequence (4456 bp)
Overview 1 RT 1: 1946-3765 bp Neighborhood of RT #1 [1946, 3869] YutE Polbeta RVT-GII GIIM Feature: gene Location: 1946-2377 bp Feature: domain Description: YutE Location: 1976-2369 bp Feature: domain Description: YutE Location: 1976-23 69 bp Feature: gene Location: 2374-2802 bp Feature: domain Description: Polbeta Location: 2410-2680 bp Feature: domain Description: Polbeta Location: 2410-2680 bp Feature: gene Location: 2910-3869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2916-3477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2916-3 477 bp Feature: domain Description: GIIM Note: maturase Location: 3555-3765 bp Feature: domain Description: GIIM Note: maturase Location: 3 555-3 765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YutE (COG2445), Polbeta (pfam18765), RVT-GII, GIIM (pfam08388)