myRT

myRT report for GCA_003222245.1_ASM322224v1

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Seq: QHVH01000039.1 Blastocatellia bacterium AA13 isolate gp4 AA13 14_0929_09_20cm_scaffold_48_curated, whole genome shotgun sequence (47300 bp)
Overview 1 RT 1: 41293-44607 bp Neighborhood of RT #1 [41293, 44607] YcfA Nudix_Hydrolase RVT_N RVT-GII GIIM Feature: gene Location: 41293-41439 bp Feature: domain Description: YcfA Location: 41302-41422 bp Feature: domain Description: YcfA Location: 41 302-41 422 bp Feature: gene Location: 41849-42325 bp Feature: domain Description: Nudix_Hydrolase Location: 41879-42194 bp Feature: domain Description: Nudix_Hydrolase Location: 41 879-421 94 bp Feature: gene Location: 42510-44123 bp Feature: domain Description: RVT_N Location: 42567-42810 bp Feature: domain Description: RVT_N Location: 42567-4281 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42855-43494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42855-43494 bp Feature: domain Description: GIIM Note: maturase Location: 43545-43779 bp Feature: domain Description: GIIM Note: maturase Location: 43545-43779 bp Feature: gene Location: 44170-44382 bp Feature: gene Location: 44425-44607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcfA (COG1724), Nudix_Hydrolase (cl00447), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QHVH01000087.1 Blastocatellia bacterium AA13 isolate gp4 AA13 14_0929_09_20cm_scaffold_6336_curated, whole genome shotgun sequence (11172 bp)
Overview 1 RT 1: 8012-10892 bp Neighborhood of RT #1 [8012, 10978] nitrilase RVT-UG5 Feature: gene Location: 8012-9211 bp Feature: domain Description: nitrilase Location: 8498-9125 bp Feature: domain Description: nitrilase Location: 8498-912 5 bp Feature: gene Location: 9237-9926 bp Feature: gene Location: 9983-10978 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10442-10892 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10442 -10892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nitrilase (cl11424), RVT-UG5

Seq: QHVH01000046.1 Blastocatellia bacterium AA13 isolate gp4 AA13 14_0929_09_20cm_scaffold_67_curated, whole genome shotgun sequence (42336 bp)
Overview 1 RT 1: 15788-23394 bp Neighborhood of RT #1 [15788, 23394] CarboxypepD_reg Plug TonB_dep_Rec RVT-GII GIIM PRK05298 Feature: gene Location: 15788-19081 bp Feature: domain Description: CarboxypepD_reg Location: 15893-16130 bp Feature: domain Description: CarboxypepD_reg Location: 15893 -1613 0 bp Feature: domain Description: Plug Location: 16220-16502 bp Feature: domain Description: Plug Location: 16220-16502 bp Feature: domain Description: TonB_dep_Rec Location: 17141-19070 bp Feature: domain Description: TonB_dep_Rec Location: 17141-19070 bp Feature: gene Location: 19193-19444 bp Feature: gene Location: 19528-20910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19840-20461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19840-20461 bp Feature: domain Description: GIIM Note: maturase Location: 20509-20716 bp Feature: domain Description: GIIM Note: maturase Location: 20509-20716 bp Feature: gene Location: 21102-23087 bp Feature: domain Description: PRK05298 Location: 21108-23079 bp Feature: domain Description: PRK05298 Location: 21108-23 079 bp Feature: gene Location: 23239-23394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CarboxypepD_reg (pfam13620), Plug (pfam07715), TonB_dep_Rec (pfam00593), RVT-GII, GIIM (pfam08388), PRK05298 (excinuclease ABC subunit UvrB)

Seq: QHVH01000008.1 Blastocatellia bacterium AA13 isolate gp4 AA13 14_0929_09_20cm_scaffold_7_curated, whole genome shotgun sequence (289678 bp)
Overview 1 RT 1: 42671-48635 bp Neighborhood of RT #1 [42671, 48635] L-asparaginase_II Beta_helix RVT-UG12 INT_ICEBs1_C_like Feature: gene Location: 42671-43648 bp Feature: domain Description: L-asparaginase_II Location: 42680-43610 bp Feature: domain Description: L-asparaginase_II Location: 4 2680-4 3610 bp Feature: gene Location: 44305-45222 bp Feature: domain Description: Beta_helix Location: 44611-45142 bp Feature: domain Description: Beta_helix Location: 4 4 611-4 514 2 bp Feature: gene Location: 45777-47381 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 46158-46605 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 4 6158-4 6605 bp Feature: gene Location: 47630-48151 bp Feature: domain Description: INT_ICEBs1_C_like Location: 47738-48143 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4 7738-4 814 3 bp Feature: gene Location: 48486-48635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L-asparaginase_II (cd08964), Beta_helix (pfam13229), RVT-UG12, INT_ICEBs1_C_like (cd01189)

Seq: QHVH01000010.1 Blastocatellia bacterium AA13 isolate gp4 AA13 14_0929_09_20cm_scaffold_9_curated, whole genome shotgun sequence (182322 bp)
Overview 1 RT 1: 174463-177802 bp Neighborhood of RT #1 [174463, 177802] RVT-Retrons Feature: gene Location: 174463-174717 bp Feature: gene Location: 174775-174927 bp Feature: gene Location: 175412-177160 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 175547-176186 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 175 5 47-176186 bp Feature: gene Location: 177303-177461 bp Feature: gene Location: 177485-177802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons