myRT

myRT report for GCA_003223195.1_ASM322319v1

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Seq: QHYD01000018.1 Acidobacteria bacterium isolate gp2 AA97 14_0903_05_30cm_scaffold_16124_curated, whole genome shotgun sequence (3964 bp)
Overview 1 RT 1: 2-3790 bp Neighborhood of RT #1 [2, 3795] RVT-GII RVT-GII DUF5372 PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII Feature: gene Location: 2-241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4-1 43 bp Feature: gene Location: 302-547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320-542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320-542 bp Feature: gene Location: 466-1017 bp Feature: domain Description: DUF5372 Location: 616-784 bp Feature: domain Description: DUF5372 Location: 61 6-784 bp Feature: gene Location: 1053-3257 bp Feature: domain Description: PinE Location: 1098-1692 bp Feature: domain Description: PinE Location: 1 098-1 692 bp Feature: domain Description: Zn_ribbon_recom Location: 2046-2217 bp Feature: domain Description: Zn_ribbon_recom Location: 2046-221 7 bp Feature: domain Description: HTH_17 Location: 2931-3006 bp Feature: domain Description: HTH_1 7 Location: 2931 -3006 bp Feature: domain Description: HTH_17 Location: 3126-3222 bp Feature: domain Description: HTH_1 7 Location: 31 26-3222 bp Feature: gene Location: 3265-3795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3553-3790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3553-3790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF5372 (pfam17342), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728)

Seq: QHYD01000079.1 Acidobacteria bacterium isolate gp2 AA97 14_0903_05_30cm_scaffold_2111_curated, whole genome shotgun sequence (10477 bp)
Overview 1 RT 1: 3687-10477 bp Neighborhood of RT #1 [3687, 10476] RVT-GII GIIM Glyco_hydro_3 PRK15098 AmpC DUF1343 Feature: gene Location: 3687-3905 bp Feature: gene Location: 4208-4504 bp Feature: gene Location: 4876-6204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5179-5821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5179-582 1 bp Feature: domain Description: GIIM Note: maturase Location: 5893-6112 bp Feature: domain Description: GIIM Note: maturase Location: 5893-6112 bp Feature: gene Location: 6566-9535 bp Feature: domain Description: Glyco_hydro_3 Location: 6767-7751 bp Feature: domain Description: Glyco_hydro_3 Location: 6767-7751 bp Feature: domain Description: PRK15098 Location: 8126-8354 bp Feature: domain Description: PRK15098 Location: 812 6-8354 bp Feature: domain Description: AmpC Location: 8426-9497 bp Feature: domain Description: AmpC Location: 842 6-9497 bp Feature: gene Location: 9673-10476 bp Feature: domain Description: DUF1343 Location: 9856-10477 bp Feature: domain Description: DUF1343 Location: 9856-10477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Glyco_hydro_3 (pfam00933), PRK15098 (beta-glucosidase BglX), AmpC (COG1680), DUF1343 (pfam07075)

Seq: QHYD01000024.1 Acidobacteria bacterium isolate gp2 AA97 14_0903_05_30cm_scaffold_22183_curated, whole genome shotgun sequence (3319 bp)
Overview 1 RT 1: 2-2799 bp Neighborhood of RT #1 [2, 2915] RVT-GII GIIM MviM Feature: gene Location: 2-298 bp Feature: gene Location: 450-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1452 bp Feature: domain Description: GIIM Note: maturase Location: 1530-1740 bp Feature: domain Description: GIIM Note: maturase Location: 153 0-1740 bp Feature: gene Location: 480-2309 bp Feature: gene Location: 2451-2915 bp Feature: domain Description: MviM Location: 2463-2799 bp Feature: domain Description: MviM Location: 2463 -2799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), RVT-GII, GIIM (pfam08388)

Seq: QHYD01000133.1 Acidobacteria bacterium isolate gp2 AA97 14_0903_05_30cm_scaffold_358_e_3961_curated, whole genome shotgun sequence (47208 bp)
Overview 1 RT 1: 25358-33010 bp Neighborhood of RT #1 [25358, 33069] ClpA M48C_bepA_like RVT-GII GIIM Phosphodiest PRK11660 Feature: gene Location: 25358-26521 bp Feature: domain Description: ClpA Location: 25418-26372 bp Feature: domain Description: ClpA Location: 254 18-26372 bp Feature: gene Location: 26662-28101 bp Feature: domain Description: M48C_bepA_like Location: 26848-27475 bp Feature: domain Description: M4 8C_bepA_like Location: 2684 8-274 75 bp Feature: gene Location: 28601-29467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28829-29042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28829-2904 2 bp Feature: domain Description: GIIM Note: maturase Location: 29090-29324 bp Feature: domain Description: GIIM Note: maturase Location: 29090-29324 bp Feature: gene Location: 29573-31198 bp Feature: domain Description: Phosphodiest Location: 29687-30986 bp Feature: domain Description: Phosphodiest Location: 29687-30986 bp Feature: gene Location: 31366-33069 bp Feature: domain Description: PRK11660 Location: 31417-33010 bp Feature: domain Description: PRK11660 Location: 314 17-33010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ClpA (TIGR02639), M48C_bepA_like (cd07333), RVT-GII, GIIM (pfam08388), Phosphodiest (pfam01663), PRK11660 (putative transporter; Provisional)