myRT

myRT report for GCA_003224055.1_ASM322405v1

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Seq: QHYE01000044.1 Acidobacteria bacterium isolate gp2 AA96 14_0903_13_30cm_scaffold_1251807_curated, whole genome shotgun sequence (127056 bp)
Overview 1 RT 1: 629-4162 bp Neighborhood of RT #1 [629, 4176] YdeI HTH_ARSR RVT-GII VOC_like Feature: gene Location: 629-1189 bp Feature: domain Description: YdeI Location: 650-1178 bp Feature: domain Description: YdeI Location: 650-1 1 78 bp Feature: gene Location: 1487-1864 bp Feature: domain Description: HTH_ARSR Location: 1502-1715 bp Feature: domain Description: HTH_ARSR Location: 1 502-1 71 5 bp Feature: gene Location: 1933-3204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2140-2830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 40-2830 bp Feature: gene Location: 3407-3739 bp Feature: gene Location: 3784-4176 bp Feature: domain Description: VOC_like Location: 3802-4162 bp Feature: domain Description: VOC_like Location: 3802-41 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdeI (COG4430), HTH_ARSR (smart00418), RVT-GII, VOC_like (cd16355)

Seq: QHYE01000079.1 Acidobacteria bacterium isolate gp2 AA96 14_0903_13_30cm_scaffold_3018741_curated, whole genome shotgun sequence (65526 bp)
Overview 1 RT 1: 62853-65434 bp Neighborhood of RT #1 [62853, 65523] TPR TPR TPR RVT-GII GIIM Feature: gene Location: 62853-63728 bp Feature: domain Description: TPR Location: 62991-63129 bp Feature: domain Description: TPR Location: 62 991-6312 9 bp Feature: domain Description: TPR Location: 63177-63384 bp Feature: domain Description: TPR Location: 63177-63384 bp Feature: domain Description: TPR Location: 63519-63633 bp Feature: domain Description: TPR Location: 63519-63633 bp Feature: gene Location: 63914-64093 bp Feature: gene Location: 64210-65523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64546-65164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64546-65164 bp Feature: domain Description: GIIM Note: maturase Location: 65218-65434 bp Feature: domain Description: GIIM Note: maturase Location: 652 18-65434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-GII, GIIM (pfam08388)

Seq: QHYE01000081.1 Acidobacteria bacterium isolate gp2 AA96 14_0903_13_30cm_scaffold_3285469_curated, whole genome shotgun sequence (23737 bp)
Overview 1 RT 1: 2-2590 bp Neighborhood of RT #1 [2, 2590] RVT-GII Feature: gene Location: 2-775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290-755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290-755 bp Feature: gene Location: 953-1150 bp Feature: gene Location: 1625-2590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QHYE01000024.1 Acidobacteria bacterium isolate gp2 AA96 14_0903_13_30cm_scaffold_550383_curated, whole genome shotgun sequence (122502 bp)
Overview 1 RT 1: 2-1493 bp 2 RT 2: 92158-98550 bp Neighborhood of RT #1 [2, 1493] RVT-GII Neighborhood of RT #2 [92158, 98552] RVT-GII OmpA DHOR DHOR Feature: gene Location: 2-784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311-785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311-785 bp Feature: gene Location: 992-1207 bp Feature: gene Location: 1338-1493 bp Feature: gene Location: 92158-93303 bp Feature: gene Location: 93522-93818 bp Feature: gene Location: 94046-94912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94400-94775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 4 00-94 775 bp Feature: gene Location: 95374-96999 bp Feature: domain Description: OmpA Location: 96400-96949 bp Feature: domain Description: OmpA Location: 964 00-9694 9 bp Feature: gene Location: 97251-98552 bp Feature: domain Description: DHOR Location: 97401-97473 bp Feature: domain Description: DHOR Location: 974 01-974 73 bp Feature: domain Description: DHOR Location: 97644-98550 bp Feature: domain Description: DHOR Location: 9764 4 -98550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, OmpA (pfam00691), DHOR (pfam06537)

Seq: QHYE01000010.1 Acidobacteria bacterium isolate gp2 AA96 14_0903_13_30cm_scaffold_99884_curated, whole genome shotgun sequence (56531 bp)
Overview 1 RT 1: 7354-13548 bp Neighborhood of RT #1 [7354, 13574] YecE HTH_37 RVT-GII ligD Feature: gene Location: 7354-8097 bp Feature: domain Description: YecE Location: 7396-8086 bp Feature: domain Description: YecE Location: 7396-8086 bp Feature: gene Location: 8105-8446 bp Feature: domain Description: HTH_37 Location: 8156-8372 bp Feature: domain Description: HTH_37 Location: 815 6-8372 bp Feature: gene Location: 8821-10254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9190-9880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9190-9880 bp Feature: gene Location: 10306-10455 bp Feature: gene Location: 10875-13574 bp Feature: domain Description: ligD Location: 10881-13548 bp Feature: domain Description: ligD Location: 10881-135 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YecE (COG1801), HTH_37 (pfam13744), RVT-GII, ligD (PRK09633)