myRT

myRT report for GCA_003224085.1_ASM322408v1

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Seq: QHYK01000076.1 Acidobacteria bacterium isolate gp2 AA90 14_0927_12_20cm_scaffold_189_curated, whole genome shotgun sequence (100748 bp)
Overview 1 RT 1: 97340-100713 bp Neighborhood of RT #1 [97340, 100745] RutB RhtB RVT-Retrons Amidohydro_2 Feature: gene Location: 97340-98071 bp Feature: domain Description: RutB Location: 97361-98042 bp Feature: domain Description: RutB Location: 97361 -98042 bp Feature: gene Location: 97899-98777 bp Feature: domain Description: RhtB Location: 98166-98766 bp Feature: domain Description: RhtB Location: 981 66-98766 bp Feature: gene Location: 98948-99262 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 98951-99197 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 98951 -991 97 bp Feature: gene Location: 99735-100745 bp Feature: domain Description: Amidohydro_2 Location: 99828-100713 bp Feature: domain Description: Amidohydro_2 Location: 99828-1 0071 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RutB (TIGR03614), RhtB (COG1280), RVT-Retrons, Amidohydro_2 (pfam04909)

Seq: QHYK01000010.1 Acidobacteria bacterium isolate gp2 AA90 14_0927_12_20cm_scaffold_3631_curated, whole genome shotgun sequence (17979 bp)
Overview 1 RT 1: 13502-17835 bp Neighborhood of RT #1 [13502, 17855] KAP_NTPase RVT-GII Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 13502-13888 bp Feature: domain Description: KAP_NTPase Location: 13571-13802 bp Feature: domain Description: KAP_NTPase Location: 13571-13802 bp Feature: gene Location: 13960-14124 bp Feature: gene Location: 14461-15405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14749-15403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14749-15403 bp Feature: gene Location: 15739-16968 bp Feature: domain Description: Phage_int_SAM_1 Location: 16087-16333 bp Feature: domain Description: Phage_int_SAM_1 Location: 16087-16333 bp Feature: domain Description: INT_RitA_C_like Location: 16414-16939 bp Feature: domain Description: INT_RitA_C_like Location: 16414-16939 bp Feature: gene Location: 16965-17855 bp Feature: domain Description: INT_RitB_C_like Location: 17280-17835 bp Feature: domain Description: INT_RitB_C_like Location: 172 80-17835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797)

Seq: QHYK01000126.1 Acidobacteria bacterium isolate gp2 AA90 14_0927_12_20cm_scaffold_920_curated, whole genome shotgun sequence (25253 bp)
Overview 1 RT 1: 5902-7696 bp Neighborhood of RT #1 [5902, 7696] DUF899 RVT-GII HTH_17 HTH_17 Feature: gene Location: 5902-6159 bp Feature: domain Description: DUF899 Location: 5935-6124 bp Feature: domain Description: DUF899 Location: 593 5-6124 bp Feature: gene Location: 6297-6497 bp Feature: gene Location: 6615-6788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6621-6783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6621-6783 bp Feature: gene Location: 6796-7191 bp Feature: domain Description: HTH_17 Location: 6868-6940 bp Feature: domain Description: HTH_17 Location: 6868-6940 bp Feature: domain Description: HTH_17 Location: 7060-7156 bp Feature: domain Description: HTH_17 Location: 7060-7156 bp Feature: gene Location: 7559-7696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF899 (pfam05988), RVT-GII, HTH_17 (pfam12728)