myRT

myRT report for GCA_003224475.1_ASM322447v1

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Seq: QHYX01000033.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_11597_curated, whole genome shotgun sequence (17007 bp)
Overview 1 RT 1: 7447-15073 bp Neighborhood of RT #1 [7447, 15177] CarboxypepD_reg TonB_dep_Rec RVT-GII YecE Feature: gene Location: 7447-11211 bp Feature: domain Description: CarboxypepD_reg Location: 7552-7792 bp Feature: domain Description: CarboxypepD_reg Location: 7552-7792 bp Feature: domain Description: TonB_dep_Rec Location: 9208-9919 bp Feature: domain Description: TonB_dep_Rec Location: 9208-991 9 bp Feature: gene Location: 11289-11537 bp Feature: gene Location: 11937-13235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12192-12885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 92-1 2885 bp Feature: gene Location: 13408-13620 bp Feature: gene Location: 14101-15177 bp Feature: domain Description: YecE Location: 14257-15073 bp Feature: domain Description: YecE Location: 1 4257-1 5073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YecE (COG1801), CarboxypepD_reg (pfam13620), TonB_dep_Rec (pfam00593)

Seq: QHYX01000134.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_1201_curated, whole genome shotgun sequence (25856 bp)
Overview 1 RT 1: 13412-18010 bp Neighborhood of RT #1 [13412, 18447] RVT_N RVT-GII GIIM HNHc DDE_Tnp_1_4 AbiEi_4 Feature: gene Location: 13412-13783 bp Feature: gene Location: 13882-14565 bp Feature: gene Location: 14980-16701 bp Feature: RT Description: RVT_N Location: 15037-15274 bp Feature: RT Description: RVT_N Location: 15037-152 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15328-15979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1532 8-15979 bp Feature: domain Description: GIIM Note: maturase Location: 16033-16267 bp Feature: domain Description: GIIM Note: maturase Location: 16033-162 67 bp Feature: domain Description: HNHc Note: nucleases Location: 16495-16651 bp Feature: domain Description: HNHc Note: nucleases Location: 16495-16651 bp Feature: gene Location: 16931-17671 bp Feature: domain Description: DDE_Tnp_1_4 Location: 16943-17618 bp Feature: domain Description: DDE_Tnp_1_4 Location: 16943-17618 bp Feature: gene Location: 17809-18447 bp Feature: domain Description: AbiEi_4 Location: 17899-18010 bp Feature: domain Description: AbiEi_4 Location: 17899-18010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_1_4 (pfam13701), AbiEi_4 (pfam13338)

Seq: QHYX01000143.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_1325_curated, whole genome shotgun sequence (18358 bp)
Overview 1 RT 1: 7659-12173 bp Neighborhood of RT #1 [7659, 12173] OmpR RVT-GII GIIM BaeS Feature: gene Location: 7659-7880 bp Feature: gene Location: 7893-8642 bp Feature: domain Description: OmpR Location: 7989-8637 bp Feature: domain Description: OmpR Location: 7989-863 7 bp Feature: gene Location: 9027-10352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9315-9975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 15-9975 bp Feature: domain Description: GIIM Note: maturase Location: 10050-10248 bp Feature: domain Description: GIIM Note: maturase Location: 10050-10248 bp Feature: gene Location: 10568-11860 bp Feature: domain Description: BaeS Location: 11063-11822 bp Feature: domain Description: BaeS Location: 11063 -11822 bp Feature: gene Location: 11844-12173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), OmpR (COG0745), RVT-GII, GIIM (pfam08388)

Seq: QHYX01000369.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_19205_curated, whole genome shotgun sequence (4699 bp)
Overview 1 RT 1: 1426-4470 bp Neighborhood of RT #1 [1426, 4475] PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII Feature: gene Location: 1426-1596 bp Feature: gene Location: 1595-3799 bp Feature: domain Description: PinE Location: 1640-2234 bp Feature: domain Description: PinE Location: 164 0-2234 bp Feature: domain Description: Zn_ribbon_recom Location: 2588-2759 bp Feature: domain Description: Zn_ribbon_recom Location: 2588-2759 bp Feature: domain Description: HTH_17 Location: 3476-3548 bp Feature: domain Description: HTH_17 Location: 34 76-354 8 bp Feature: domain Description: HTH_17 Location: 3668-3764 bp Feature: domain Description: HTH_17 Location: 3668-3764 bp Feature: gene Location: 3807-4475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4230-4470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 230-4 4 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), RVT-GII

Seq: QHYX01000334.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_21612_curated, whole genome shotgun sequence (4117 bp)
Overview 1 RT 1: 3-1251 bp Neighborhood of RT #1 [3, 1376] RVT-GII DUF433 Feature: gene Location: 3-392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-393 bp Feature: gene Location: 434-853 bp Feature: gene Location: 960-1376 bp Feature: domain Description: DUF433 Location: 1092-1251 bp Feature: domain Description: DUF433 Location: 1092-125 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF433 (pfam04255)

Seq: QHYX01000349.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_33029_curated, whole genome shotgun sequence (6254 bp)
Overview 1 RT 1: 3-1756 bp Neighborhood of RT #1 [3, 1756] RVT-GII Feature: gene Location: 3-980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417-981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417-981 bp Feature: gene Location: 294-1358 bp Feature: gene Location: 1355-1756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QHYX01000234.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_606_curated, whole genome shotgun sequence (28311 bp)
Overview 1 RT 1: 18770-22465 bp Neighborhood of RT #1 [18770, 22677] RAYT RVT-GII Y1_Tnp COG3415 Feature: gene Location: 18770-19141 bp Feature: gene Location: 19413-19580 bp Feature: domain Description: RAYT Location: 19428-19566 bp Feature: domain Description: RAYT Location: 19428-19566 bp Feature: gene Location: 19911-21407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20337-21027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20337 -21027 bp Feature: gene Location: 21413-21748 bp Feature: domain Description: Y1_Tnp Location: 21479-21716 bp Feature: domain Description: Y1_Tnp Location: 2147 9-217 16 bp Feature: gene Location: 21859-22677 bp Feature: domain Description: COG3415 Location: 22084-22465 bp Feature: domain Description: COG3415 Location: 22084-22465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-GII, Y1_Tnp (pfam01797), COG3415 (Transposase )

Seq: QHYX01000382.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_7248_curated, whole genome shotgun sequence (7654 bp)
Overview 1 RT 1: 6050-7550 bp Neighborhood of RT #1 [6050, 7651] DUF433 RVT-GII GIIM Feature: gene Location: 6050-6310 bp Feature: domain Description: DUF433 Location: 6089-6242 bp Feature: domain Description: DUF433 Location: 608 9-6242 bp Feature: gene Location: 6383-6589 bp Feature: gene Location: 6719-7651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6851-7259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68 51-7259 bp Feature: domain Description: GIIM Note: maturase Location: 7331-7550 bp Feature: domain Description: GIIM Note: maturase Location: 7331-7550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF433 (pfam04255), RVT-GII, GIIM (pfam08388)

Seq: QHYX01000252.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_809_curated, whole genome shotgun sequence (23699 bp)
Overview 1 RT 1: 22122-23464 bp Neighborhood of RT #1 [22122, 23697] RVT-GII Feature: gene Location: 22122-22259 bp Feature: gene Location: 22366-22713 bp Feature: gene Location: 22966-23697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22972-23464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229 72-23464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QHYX01000354.1 Acidobacteria bacterium isolate gp2 AA106 14_0929_12_30cm_scaffold_9058_curated, whole genome shotgun sequence (7457 bp)
Overview 1 RT 1: 3846-7269 bp Neighborhood of RT #1 [3846, 7454] TPR TPR_2 TPR TPR TPR RVT-GII GIIM RVT-GII Feature: gene Location: 3846-4073 bp Feature: gene Location: 4108-5664 bp Feature: domain Description: TPR Location: 4198-4450 bp Feature: domain Description: TPR Location: 4198-4450 bp Feature: domain Description: TPR_2 Location: 4501-4588 bp Feature: domain Description: TPR_2 Location: 4501-4588 bp Feature: domain Description: TPR Location: 4633-4837 bp Feature: domain Description: TPR Location: 4633-4837 bp Feature: domain Description: TPR Location: 5047-5296 bp Feature: domain Description: TPR Location: 5047-5296 bp Feature: domain Description: TPR Location: 5326-5596 bp Feature: domain Description: TPR Location: 5326-5596 bp Feature: gene Location: 5809-6729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5956-6340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5956-6340 bp Feature: domain Description: GIIM Note: maturase Location: 6403-6586 bp Feature: domain Description: GIIM Note: maturase Location: 6403-6586 bp Feature: gene Location: 6738-7454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6768-7269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6768-7269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), TPR_2 (pfam07719), RVT-GII, GIIM (pfam08388)