myRT

myRT report for GCA_003224775.1_ASM322477v1

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Seq: QHZT01000190.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_1180747_curated, whole genome shotgun sequence (7160 bp)
Overview 1 RT 1: 1-2451 bp Neighborhood of RT #1 [1, 2456] RVT_N RVT-GII PRK05184 Feature: gene Location: 1-591 bp Feature: domain Description: RVT_N Location: 52-295 bp Feature: domain Description: RVT_N Location: 52-295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-592 bp Feature: gene Location: 878-1225 bp Feature: gene Location: 1542-2456 bp Feature: domain Description: PRK05184 Location: 1545-2451 bp Feature: domain Description: PRK051 84 Location: 1 545-2451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK05184 (pyrroloquinoline quinone biosynthesis protein PqqB; Provisional)

Seq: QHZT01000037.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_231610_curated, whole genome shotgun sequence (6070 bp)
Overview 1 RT 1: 1-1451 bp Neighborhood of RT #1 [1, 1483] RVT-GII GIIM PilZ Feature: gene Location: 1-663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-2 56 bp Feature: domain Description: GIIM Note: maturase Location: 364-580 bp Feature: domain Description: GIIM Note: maturase Location: 364-580 bp Feature: gene Location: 882-1052 bp Feature: gene Location: 1112-1483 bp Feature: domain Description: PilZ Location: 1154-1451 bp Feature: domain Description: PilZ Location: 1154-1451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PilZ (pfam07238)

Seq: QHZT01000397.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_2785602_curated, whole genome shotgun sequence (3505 bp)
Overview 1 RT 1: 31-2467 bp Neighborhood of RT #1 [31, 2481] RVT-GII GIIM AraC_binding GlxA Feature: gene Location: 31-372 bp Feature: gene Location: 428-1420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 1-809 bp Feature: domain Description: GIIM Note: maturase Location: 863-1097 bp Feature: domain Description: GIIM Note: maturase Location: 863 -1097 bp Feature: gene Location: 1450-1605 bp Feature: gene Location: 1654-2481 bp Feature: domain Description: AraC_binding Location: 1762-1897 bp Feature: domain Description: AraC_binding Location: 1762-1897 bp Feature: domain Description: GlxA Location: 2110-2467 bp Feature: domain Description: GlxA Location: 2110-2467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AraC_binding (pfam02311), GlxA (COG4977)

Seq: QHZT01000439.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_3085343_curated, whole genome shotgun sequence (21938 bp)
Overview 1 RT 1: 157-6447 bp Neighborhood of RT #1 [157, 6470] PinE Zn_ribbon_recom HTH_17 HTH_17 DUF5372 RVT-GII GIIM trpE_most Arginase Feature: gene Location: 157-2373 bp Feature: domain Description: PinE Location: 211-799 bp Feature: domain Description: PinE Location: 211-799 bp Feature: domain Description: Zn_ribbon_recom Location: 1156-1324 bp Feature: domain Description: Zn_ribbon_recom Location: 1156-1324 bp Feature: domain Description: HTH_17 Location: 2041-2116 bp Feature: domain Description: HTH_17 Location: 204 1-2116 bp Feature: domain Description: HTH_17 Location: 2236-2332 bp Feature: domain Description: HTH_17 Location: 2236-2332 bp Feature: gene Location: 2382-2831 bp Feature: domain Description: DUF5372 Location: 2406-2628 bp Feature: domain Description: DUF5372 Location: 24 06-2628 bp Feature: gene Location: 2867-3712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2876-3314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2876-3314 bp Feature: domain Description: GIIM Note: maturase Location: 3395-3614 bp Feature: domain Description: GIIM Note: maturase Location: 3395-3614 bp Feature: gene Location: 3884-5392 bp Feature: domain Description: trpE_most Location: 3965-5336 bp Feature: domain Description: trpE_most Location: 3965-5336 bp Feature: gene Location: 5535-6470 bp Feature: domain Description: Arginase Location: 5574-6447 bp Feature: domain Description: Arginase Location: 5574 -64 4 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), trpE_most (TIGR00564), Arginase (pfam00491)

Seq: QHZT01000022.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_31654_curated, whole genome shotgun sequence (4340 bp)
Overview 1 RT 1: 1-4076 bp Neighborhood of RT #1 [1, 4081] RVT-GII RVT-GII IreB LacZ Ig_GlcNase Feature: gene Location: 1-1194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-817 bp Feature: domain Description: IreB Location: 874-973 bp Feature: domain Description: IreB Location: 874-973 bp Feature: gene Location: 1403-4081 bp Feature: domain Description: LacZ Location: 1751-2816 bp Feature: domain Description: LacZ Location: 175 1-2816 bp Feature: domain Description: Ig_GlcNase Location: 3752-4076 bp Feature: domain Description: Ig_GlcNase Location: 375 2-4076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IreB, LacZ (COG3250), Ig_GlcNase (pfam18368)

Seq: QHZT01000538.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_4499453_curated, whole genome shotgun sequence (4843 bp)
Overview 1 RT 1: 166-1977 bp Neighborhood of RT #1 [166, 1977] RVT-GII Feature: gene Location: 166-600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184-562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184-56 2 bp Feature: gene Location: 1094-1453 bp Feature: gene Location: 1801-1977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QHZT01000592.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_5275672_curated, whole genome shotgun sequence (5829 bp)
Overview 1 RT 1: 154-1146 bp Neighborhood of RT #1 [154, 1146] RVT-GII Feature: gene Location: 154-654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-643 bp Feature: gene Location: 682-882 bp Feature: gene Location: 994-1146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QHZT01000617.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_5588765_curated, whole genome shotgun sequence (17782 bp)
Overview 1 RT 1: 15259-17199 bp Neighborhood of RT #1 [15259, 17780] PurR PBP1_LacI_like_6 RVT-GII Feature: gene Location: 15259-15942 bp Feature: domain Description: PurR Location: 15307-15883 bp Feature: domain Description: PurR Location: 15307-158 8 3 bp Feature: gene Location: 15939-16307 bp Feature: domain Description: PBP1_LacI_like_6 Location: 15945-16263 bp Feature: domain Description: PBP1_LacI_like_6 Location: 15945-16263 bp Feature: gene Location: 16857-17780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16863-17199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168 63-17199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PurR (COG1609), PBP1_LacI_like_6, RVT-GII

Seq: QHZT01000661.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_6268991_curated, whole genome shotgun sequence (11392 bp)
Overview 1 RT 1: 3204-10166 bp Neighborhood of RT #1 [3204, 10168] F5_F8_type_C RVT-GII ADOP Feature: gene Location: 3204-3839 bp Feature: gene Location: 4068-6188 bp Feature: domain Description: F5_F8_type_C Location: 4497-4833 bp Feature: domain Description: F5_F8_type_C Location: 449 7-4833 bp Feature: gene Location: 6356-6703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6560-6638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6560-6638 bp Feature: gene Location: 7288-7554 bp Feature: gene Location: 7742-10168 bp Feature: domain Description: ADOP Location: 7757-10166 bp Feature: domain Description: ADOP Location: 7757-10166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT F5_F8_type_C (pfam00754), RVT-GII, ADOP (TIGR03434)

Seq: QHZT01000742.1 Acidobacteria bacterium isolate gp1 AA148 14_0903_13_30cm_scaffold_7754440_curated, whole genome shotgun sequence (10062 bp)
Overview 1 RT 1: 6747-9801 bp Neighborhood of RT #1 [6747, 9842] DDE_Tnp_1_4 DDE_Tnp_1_4 RVT-GII Feature: gene Location: 6747-8186 bp Feature: gene Location: 8331-8759 bp Feature: domain Description: DDE_Tnp_1_4 Location: 8367-8448 bp Feature: domain Description: DDE_Tnp_1_4 Location: 8367-8448 bp Feature: domain Description: DDE_Tnp_1_4 Location: 8589-8652 bp Feature: domain Description: DDE_Tnp_1_4 Location: 8589-8652 bp Feature: gene Location: 8829-9842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9141-9801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9141-9801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII