myRT

myRT report for GCA_003225275.1_ASM322527v1

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Seq: QHYY01000022.1 Acidobacteria bacterium isolate gp2 AA105 14_0929_09_40cm_scaffold_10903_curated, whole genome shotgun sequence (8446 bp)
Overview 1 RT 1: 1-2148 bp Neighborhood of RT #1 [1, 2148] RVT-GII Feature: gene Location: 1-552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-1 30 bp Feature: gene Location: 616-1374 bp Feature: gene Location: 1756-2148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: QHYY01000135.1 Acidobacteria bacterium isolate gp2 AA105 14_0929_09_40cm_scaffold_15197_curated, whole genome shotgun sequence (6055 bp)
Overview 1 RT 1: 2-1126 bp Neighborhood of RT #1 [2, 1126] RVT-GII Feature: gene Location: 2-526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-500 bp Feature: gene Location: 535-750 bp Feature: gene Location: 779-1126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: QHYY01000588.1 Acidobacteria bacterium isolate gp2 AA105 14_0929_09_40cm_scaffold_22975_curated, whole genome shotgun sequence (6871 bp)
Overview 1 RT 1: 308-4256 bp Neighborhood of RT #1 [308, 4693] RVT_N RVT-GII GIIM DDE_Tnp_1_4 AbiEi_4 Feature: gene Location: 308-622 bp Feature: gene Location: 619-990 bp Feature: gene Location: 1405-2991 bp Feature: RT Description: RVT_N Location: 1462-1699 bp Feature: RT Description: RVT_N Location: 1462-1699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753-2404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753 -2404 bp Feature: domain Description: GIIM Note: maturase Location: 2458-2692 bp Feature: domain Description: GIIM Note: maturase Location: 2458-2692 bp Feature: gene Location: 3177-3917 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3189-3864 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3 189-3 864 bp Feature: gene Location: 4055-4693 bp Feature: domain Description: AbiEi_4 Location: 4145-4256 bp Feature: domain Description: AbiEi_4 Location: 4145-4256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), GIIM (pfam08388), AbiEi_4 (pfam13338)

Seq: QHYY01000325.1 Acidobacteria bacterium isolate gp2 AA105 14_0929_09_40cm_scaffold_4160_curated, whole genome shotgun sequence (24982 bp)
Overview 1 RT 1: 5728-11036 bp Neighborhood of RT #1 [5728, 11036] CytoC_RC CytoC_RC TPR BaeS RVT-GII GIIM OmpR Feature: gene Location: 5728-6576 bp Feature: domain Description: CytoC_RC Location: 5965-6025 bp Feature: domain Description: CytoC_RC Location: 5965-6025 bp Feature: domain Description: CytoC_RC Location: 6052-6214 bp Feature: domain Description: CytoC_RC Location: 6052-6214 bp Feature: domain Description: TPR Location: 6343-6550 bp Feature: domain Description: TPR Location: 634 3-6550 bp Feature: gene Location: 6677-8347 bp Feature: domain Description: BaeS Location: 7559-8309 bp Feature: domain Description: BaeS Location: 7559-8309 bp Feature: gene Location: 8563-9888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8851-9511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8851-9511 bp Feature: domain Description: GIIM Note: maturase Location: 9586-9784 bp Feature: domain Description: GIIM Note: maturase Location: 9586-9784 bp Feature: gene Location: 9870-10856 bp Feature: domain Description: OmpR Location: 10203-10851 bp Feature: domain Description: OmpR Location: 10203-10851 bp Feature: gene Location: 10869-11036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CytoC_RC (pfam02276), TPR (smart00028), BaeS (COG0642), GIIM (pfam08388), OmpR (COG0745)

Seq: QHYY01000666.1 Acidobacteria bacterium isolate gp2 AA105 14_0929_09_40cm_scaffold_49337_curated, whole genome shotgun sequence (4505 bp)
Overview 1 RT 1: 1509-4220 bp Neighborhood of RT #1 [1509, 4252] RAYT RVT-GII Y1_Tnp Feature: gene Location: 1509-1880 bp Feature: gene Location: 2152-2319 bp Feature: domain Description: RAYT Location: 2167-2305 bp Feature: domain Description: RAYT Location: 2167-2305 bp Feature: gene Location: 2700-3911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2841-3531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2841-35 31 bp Feature: gene Location: 3917-4252 bp Feature: domain Description: Y1_Tnp Location: 3983-4220 bp Feature: domain Description: Y1_Tnp Location: 3983-4220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), Y1_Tnp (pfam01797)

Seq: QHYY01000196.1 Acidobacteria bacterium isolate gp2 AA105 14_0929_09_40cm_scaffold_5309_curated, whole genome shotgun sequence (12325 bp)
Overview 1 RT 1: 3946-12131 bp Neighborhood of RT #1 [3946, 12274] TPR TPR_11 TPR TPR CarboxypepD_reg TonB_dep_Rec RVT-GII RVT-GII GIIM Feature: gene Location: 3946-5391 bp Feature: domain Description: TPR Location: 4189-4417 bp Feature: domain Description: TPR Location: 4189-4417 bp Feature: domain Description: TPR_11 Location: 4495-4591 bp Feature: domain Description: TPR_11 Location: 4495-4591 bp Feature: domain Description: TPR Location: 4711-4987 bp Feature: domain Description: TPR Location: 4711-4987 bp Feature: domain Description: TPR Location: 5008-5299 bp Feature: domain Description: TPR Location: 5008-5299 bp Feature: gene Location: 5749-9687 bp Feature: domain Description: CarboxypepD_reg Location: 5854-6094 bp Feature: domain Description: CarboxypepD_reg Location: 5854-6 094 bp Feature: domain Description: TonB_dep_Rec Location: 7507-8221 bp Feature: domain Description: TonB_dep_Rec Location: 7507-8221 bp Feature: gene Location: 10087-11385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10342-11035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10342-11035 bp Feature: gene Location: 11354-12274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11501-11885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11501-11885 bp Feature: domain Description: GIIM Note: maturase Location: 11948-12131 bp Feature: domain Description: GIIM Note: maturase Location: 11948-12131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), TPR (smart00028), TPR_11 (pfam13414), CarboxypepD_reg (pfam13620), TonB_dep_Rec (pfam00593)

Seq: QHYY01000531.1 Acidobacteria bacterium isolate gp2 AA105 14_0929_09_40cm_scaffold_7203_curated, whole genome shotgun sequence (8548 bp)
Overview 1 RT 1: 2-2254 bp Neighborhood of RT #1 [2, 2313] RVT-GII Phd Feature: gene Location: 2-1225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548-1181 bp Feature: gene Location: 1271-1672 bp Feature: gene Location: 2059-2313 bp Feature: domain Description: Phd Location: 2086-2254 bp Feature: domain Description: Phd Location: 2086-2254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phd (COG4118)