myRT

myRT report for GCA_003225295.1_ASM322529v1

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Seq: QHYZ01000162.1 Acidobacteria bacterium isolate gp2 AA104 14_0929_09_30cm_scaffold_13648_curated, whole genome shotgun sequence (5613 bp)
Overview 1 RT 1: 3-3113 bp Neighborhood of RT #1 [3, 3199] RVT-GII GIIM Arr-ms Feature: gene Location: 3-155 bp Feature: gene Location: 286-612 bp Feature: gene Location: 614-1921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899-1538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899-1 538 bp Feature: domain Description: GIIM Note: maturase Location: 1610-1838 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 0-1 838 bp Feature: gene Location: 2086-2301 bp Feature: gene Location: 2786-3199 bp Feature: domain Description: Arr-ms Location: 2819-3113 bp Feature: domain Description: Arr-ms Location: 281 9-31 1 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arr-ms (pfam12120), RVT-GII, GIIM (pfam08388)

Seq: QHYZ01000142.1 Acidobacteria bacterium isolate gp2 AA104 14_0929_09_30cm_scaffold_15153_curated, whole genome shotgun sequence (10384 bp)
Overview 1 RT 1: 2373-6567 bp Neighborhood of RT #1 [2373, 6635] RVT-GII RVT-GII GIIM DUF433 Feature: gene Location: 2373-3026 bp Feature: gene Location: 3104-3352 bp Feature: gene Location: 3752-5050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4007-4700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4007-4700 bp Feature: gene Location: 5226-5966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5259-5574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 59-5574 bp Feature: domain Description: GIIM Note: maturase Location: 5646-5865 bp Feature: domain Description: GIIM Note: maturase Location: 5646-5865 bp Feature: gene Location: 6096-6302 bp Feature: gene Location: 6375-6635 bp Feature: domain Description: DUF433 Location: 6414-6567 bp Feature: domain Description: DUF433 Location: 6414-6567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF433 (pfam04255)

Seq: QHYZ01000046.1 Acidobacteria bacterium isolate gp2 AA104 14_0929_09_30cm_scaffold_1_curated, whole genome shotgun sequence (240895 bp)
Overview 1 RT 1: 223669-227574 bp Neighborhood of RT #1 [223669, 227579] BaeS RVT-GII GIIM OmpR Feature: gene Location: 223669-223908 bp Feature: gene Location: 223843-224904 bp Feature: domain Description: BaeS Location: 224107-224866 bp Feature: domain Description: BaeS Location: 224107-224866 bp Feature: gene Location: 225120-226445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225408-226068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225408-226068 bp Feature: domain Description: GIIM Note: maturase Location: 226143-226341 bp Feature: domain Description: GIIM Note: maturase Location: 226143 -2263 41 bp Feature: gene Location: 226588-226794 bp Feature: gene Location: 226830-227579 bp Feature: domain Description: OmpR Location: 226926-227574 bp Feature: domain Description: OmpR Location: 226926-227574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), RVT-GII, GIIM (pfam08388), OmpR (COG0745)

Seq: QHYZ01000006.1 Acidobacteria bacterium isolate gp2 AA104 14_0929_09_30cm_scaffold_2323_curated, whole genome shotgun sequence (23302 bp)
Overview 1 RT 1: 1-4071 bp Neighborhood of RT #1 [1, 4071] DUF3291 RVT-GII RVT-GII GIIM TPR TPR_2 TPR TPR TPR Feature: gene Location: 1-483 bp Feature: domain Description: DUF3291 Location: 4-304 bp Feature: domain Description: DUF3291 Location: 4 -304 bp Feature: gene Location: 600-812 bp Feature: gene Location: 821-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175-1409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175-14 09 bp Feature: gene Location: 1617-2108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-1719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-1719 bp Feature: domain Description: GIIM Note: maturase Location: 1782-1965 bp Feature: domain Description: GIIM Note: maturase Location: 1782-1965 bp Feature: gene Location: 2253-3809 bp Feature: domain Description: TPR Location: 2343-2595 bp Feature: domain Description: TPR Location: 234 3-2595 bp Feature: domain Description: TPR_2 Location: 2646-2733 bp Feature: domain Description: TPR_2 Location: 264 6-2733 bp Feature: domain Description: TPR Location: 2778-2982 bp Feature: domain Description: TPR Location: 2778-2982 bp Feature: domain Description: TPR Location: 3201-3354 bp Feature: domain Description: TPR Location: 3201-3354 bp Feature: domain Description: TPR Location: 3471-3741 bp Feature: domain Description: TPR Location: 34 71-374 1 bp Feature: gene Location: 3844-4071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3291 (pfam11695), RVT-GII, GIIM (pfam08388), TPR (smart00028), TPR_2 (pfam07719)

Seq: QHYZ01000289.1 Acidobacteria bacterium isolate gp2 AA104 14_0929_09_30cm_scaffold_30538_curated, whole genome shotgun sequence (3664 bp)
Overview 1 RT 1: 1-1685 bp Neighborhood of RT #1 [1, 1685] RVT-GII Feature: gene Location: 1-909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415 -910 bp Feature: gene Location: 223-1287 bp Feature: gene Location: 1284-1685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QHYZ01000206.1 Acidobacteria bacterium isolate gp2 AA104 14_0929_09_30cm_scaffold_3316_curated, whole genome shotgun sequence (11883 bp)
Overview 1 RT 1: 3-4092 bp Neighborhood of RT #1 [3, 4529] RVT_N RVT-GII GIIM HNHc DDE_Tnp_1_4 AbiEi_4 Feature: gene Location: 3-311 bp Feature: gene Location: 189-647 bp Feature: gene Location: 1062-2783 bp Feature: RT Description: RVT_N Location: 1119-1356 bp Feature: RT Description: RVT_N Location: 1119-1356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1410-2061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1410-206 1 bp Feature: domain Description: GIIM Note: maturase Location: 2115-2349 bp Feature: domain Description: GIIM Note: maturase Location: 2115-2349 bp Feature: domain Description: HNHc Note: nucleases Location: 2577-2733 bp Feature: domain Description: HNHc Note: nucleases Location: 2577-2733 bp Feature: gene Location: 3013-3753 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3025-3700 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3025-3700 bp Feature: gene Location: 3891-4529 bp Feature: domain Description: AbiEi_4 Location: 3981-4092 bp Feature: domain Description: AbiEi_4 Location: 3981-4092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QHYZ01000341.1 Acidobacteria bacterium isolate gp2 AA104 14_0929_09_30cm_scaffold_37077_curated, whole genome shotgun sequence (3097 bp)
Overview 1 RT 1: 382-2680 bp Neighborhood of RT #1 [382, 3096] RVT-GII AAA_25 Feature: gene Location: 382-543 bp Feature: gene Location: 1108-1653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1459-1645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1459-1645 bp Feature: gene Location: 1658-2020 bp Feature: gene Location: 2056-3096 bp Feature: domain Description: AAA_25 Location: 2182-2680 bp Feature: domain Description: AAA_25 Location: 2182-2680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_25 (pfam13481)

Seq: QHYZ01000330.1 Acidobacteria bacterium isolate gp2 AA104 14_0929_09_30cm_scaffold_57188_curated, whole genome shotgun sequence (2462 bp)
Overview 1 RT 1: 2-844 bp Neighborhood of RT #1 [2, 844] RVT-GII Feature: gene Location: 2-244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 -245 bp Feature: gene Location: 253-468 bp Feature: gene Location: 497-844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QHYZ01000123.1 Acidobacteria bacterium isolate gp2 AA104 14_0929_09_30cm_scaffold_833_e_2052_curated, whole genome shotgun sequence (36951 bp)
Overview 1 RT 1: 27332-31069 bp Neighborhood of RT #1 [27332, 31281] RAYT RVT-GII Y1_Tnp COG3415 Feature: gene Location: 27332-27703 bp Feature: gene Location: 27975-28142 bp Feature: domain Description: RAYT Location: 27990-28128 bp Feature: domain Description: RAYT Location: 279 9 0-28128 bp Feature: gene Location: 28473-29969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28899-29589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889 9 -29 589 bp Feature: gene Location: 29975-30310 bp Feature: domain Description: Y1_Tnp Location: 30041-30278 bp Feature: domain Description: Y1_Tnp Location: 30041-30278 bp Feature: gene Location: 30421-31281 bp Feature: domain Description: COG3415 Location: 30688-31069 bp Feature: domain Description: COG3415 Location: 30688-31069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-GII, Y1_Tnp (pfam01797), COG3415 (Transposase )