myRT

myRT report for GCA_003225465.1_ASM322546v1

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Seq: QIAH01000260.1 Acidobacteria bacterium isolate gp1 AA134 14_0903_12_20cm_scaffold_15452_curated, whole genome shotgun sequence (4711 bp)
Overview 1 RT 1: 2038-4040 bp Neighborhood of RT #1 [2038, 4471] RVT_N RVT-GII GIIM Feature: gene Location: 2038-2283 bp Feature: gene Location: 2394-2717 bp Feature: gene Location: 2759-4471 bp Feature: domain Description: RVT_N Location: 2810-3053 bp Feature: domain Description: RVT_N Location: 281 0-3053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3098-3752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3098-3752 bp Feature: domain Description: GIIM Note: maturase Location: 3806-4040 bp Feature: domain Description: GIIM Note: maturase Location: 3806-4040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QIAH01000265.1 Acidobacteria bacterium isolate gp1 AA134 14_0903_12_20cm_scaffold_15819_curated, whole genome shotgun sequence (4404 bp)
Overview 1 RT 1: 3-3850 bp Neighborhood of RT #1 [3, 3850] RVT-GII GIIM CadC1 TolBN TPR TPR Feature: gene Location: 3-875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 -447 bp Feature: domain Description: GIIM Note: maturase Location: 501-717 bp Feature: domain Description: GIIM Note: maturase Location: 501-717 bp Feature: gene Location: 1087-3045 bp Feature: domain Description: CadC1 Location: 1108-1450 bp Feature: domain Description: CadC1 Location: 1108-1450 bp Feature: domain Description: TolBN Location: 1645-2038 bp Feature: domain Description: TolBN Location: 1645-2 038 bp Feature: domain Description: TPR Location: 2143-2362 bp Feature: domain Description: TPR Location: 2 143-2 362 bp Feature: domain Description: TPR Location: 2380-2710 bp Feature: domain Description: TPR Location: 2 380-2 710 bp Feature: gene Location: 3122-3850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CadC1 (COG3710), TolBN (COG5616), TPR (smart00028)

Seq: QIAH01000270.1 Acidobacteria bacterium isolate gp1 AA134 14_0903_12_20cm_scaffold_21505_curated, whole genome shotgun sequence (4316 bp)
Overview 1 RT 1: 362-4067 bp Neighborhood of RT #1 [362, 4067] GYD RVT-GII Feature: gene Location: 362-655 bp Feature: domain Description: GYD Location: 374-641 bp Feature: domain Description: GYD Location: 3 74-641 bp Feature: gene Location: 704-1099 bp Feature: gene Location: 1371-3008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1941-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1941-263 1 bp Feature: gene Location: 3094-3264 bp Feature: gene Location: 3591-4067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GYD (pfam08734), RVT-GII

Seq: QIAH01000525.1 Acidobacteria bacterium isolate gp1 AA134 14_0903_12_20cm_scaffold_34492_e_371_curated, whole genome shotgun sequence (5234 bp)
Overview 1 RT 1: 2672-4986 bp Neighborhood of RT #1 [2672, 5231] FolA DEDDh PRK07983 RVT-UG12 Feature: gene Location: 2672-2995 bp Feature: domain Description: FolA Location: 2681-2915 bp Feature: domain Description: FolA Location: 2681-2915 bp Feature: gene Location: 3332-4141 bp Feature: domain Description: DEDDh Location: 3395-3857 bp Feature: domain Description: DEDDh Location: 3395-3857 bp Feature: domain Description: PRK07983 Location: 3989-4070 bp Feature: domain Description: PRK07983 Location: 3989-4 070 bp Feature: gene Location: 4188-5231 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 4569-4986 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 4 569-4 986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FolA (COG0262), DEDDh (cd06127), PRK07983 (exodeoxyribonuclease X; Provisional), RVT-UG12

Seq: QIAH01000189.1 Acidobacteria bacterium isolate gp1 AA134 14_0903_12_20cm_scaffold_4003_curated, whole genome shotgun sequence (21756 bp)
Overview 1 RT 1: 349-2777 bp Neighborhood of RT #1 [349, 2777] RVT-GII DUF4375 Feature: gene Location: 349-1911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844-1534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844-15 34 bp Feature: gene Location: 2040-2540 bp Feature: domain Description: DUF4375 Location: 2187-2526 bp Feature: domain Description: DUF4375 Location: 2187-25 26 bp Feature: gene Location: 2577-2777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4375 (pfam14300)

Seq: QIAH01000498.1 Acidobacteria bacterium isolate gp1 AA134 14_0903_12_20cm_scaffold_7442_curated, whole genome shotgun sequence (10928 bp)
Overview 1 RT 1: 2680-8556 bp Neighborhood of RT #1 [2680, 8666] YciW RVT-Retrons CarboxypepD_reg TonB_dep_Rec rpsU Feature: gene Location: 2680-3156 bp Feature: domain Description: YciW Location: 2695-3106 bp Feature: domain Description: YciW Location: 26 95-3106 bp Feature: gene Location: 3189-3329 bp Feature: gene Location: 3424-4767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3880-4522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3880-4522 bp Feature: gene Location: 5018-8257 bp Feature: domain Description: CarboxypepD_reg Location: 5120-5357 bp Feature: domain Description: CarboxypepD_reg Location: 5120-5357 bp Feature: domain Description: TonB_dep_Rec Location: 6326-8246 bp Feature: domain Description: TonB_dep_Rec Location: 6 326 -8246 bp Feature: gene Location: 8400-8666 bp Feature: domain Description: rpsU Location: 8403-8556 bp Feature: domain Description: rpsU Location: 8403-8556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YciW (COG2128), RVT-Retrons, CarboxypepD_reg (pfam13620), TonB_dep_Rec (pfam00593), rpsU (PRK00270)

Seq: QIAH01000392.1 Acidobacteria bacterium isolate gp1 AA134 14_0903_12_20cm_scaffold_899_curated, whole genome shotgun sequence (34035 bp)
Overview 1 RT 1: 3-3656 bp Neighborhood of RT #1 [3, 3656] PAF-AH_p_II RVT-GII GIIM Feature: gene Location: 3-155 bp Feature: gene Location: 350-1186 bp Feature: domain Description: PAF-AH_p_II Location: 677-998 bp Feature: domain Description: PAF-AH_p_II Location: 67 7 -998 bp Feature: gene Location: 1401-2171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1641-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1641-1812 bp Feature: domain Description: GIIM Note: maturase Location: 1884-2100 bp Feature: domain Description: GIIM Note: maturase Location: 1884-2100 bp Feature: gene Location: 2201-2455 bp Feature: gene Location: 2724-3656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAF-AH_p_II (pfam03403), RVT-GII, GIIM (pfam08388)