myRT

myRT report for GCA_003225555.1_ASM322555v1

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Seq: QIAM01000010.1 Acidobacteria bacterium isolate gp1 AA129 14_0903_13_30cm_scaffold_269624_curated, whole genome shotgun sequence (11836 bp)
Overview 1 RT 1: 747-7823 bp Neighborhood of RT #1 [747, 7823] CadC1 mod_pep_cyc Cytochrome_CBB3 DHOR DHOR RVT-GII Feature: gene Location: 747-3092 bp Feature: domain Description: CadC1 Location: 783-1116 bp Feature: domain Description: CadC1 Location: 783-1 1 1 6 bp Feature: domain Description: mod_pep_cyc Location: 1176-2763 bp Feature: domain Description: mod_pep_cyc Location: 1 1 76-2763 bp Feature: gene Location: 3305-4864 bp Feature: domain Description: Cytochrome_CBB3 Location: 3638-3713 bp Feature: domain Description: Cytochrome_CBB3 Location: 3638-371 3 bp Feature: domain Description: DHOR Location: 3968-4334 bp Feature: domain Description: DHOR Location: 3968-4334 bp Feature: domain Description: DHOR Location: 4481-4733 bp Feature: domain Description: DHOR Location: 4481 -4733 bp Feature: gene Location: 5253-6740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5745-6357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5745-6357 bp Feature: gene Location: 6780-7058 bp Feature: gene Location: 7434-7823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cytochrome_CBB3 (pfam13442), DHOR (pfam06537), RVT-GII, CadC1 (COG3710), mod_pep_cyc (TIGR04510)

Seq: QIAM01000009.1 Acidobacteria bacterium isolate gp1 AA129 14_0903_13_30cm_scaffold_286640_curated, whole genome shotgun sequence (56550 bp)
Overview 1 RT 1: 1-3763 bp Neighborhood of RT #1 [1, 3774] RVT-GII ExbD ExbD M13 Feature: gene Location: 1-516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-514 bp Feature: gene Location: 166-1659 bp Feature: domain Description: ExbD Location: 1039-1327 bp Feature: domain Description: ExbD Location: 1039-132 7 bp Feature: domain Description: ExbD Location: 1471-1636 bp Feature: domain Description: ExbD Location: 1471-1636 bp Feature: gene Location: 1729-3774 bp Feature: domain Description: M13 Location: 1858-3763 bp Feature: domain Description: M13 Location: 1858-3763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ExbD (pfam02472), M13 (cd08662)

Seq: QIAM01000072.1 Acidobacteria bacterium isolate gp1 AA129 14_0903_13_30cm_scaffold_4209699_curated, whole genome shotgun sequence (2509 bp)
Overview 1 RT 1: 58-1756 bp Neighborhood of RT #1 [58, 1756] RVT-GII GIIM Feature: gene Location: 58-888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 -463 bp Feature: domain Description: GIIM Note: maturase Location: 511-730 bp Feature: domain Description: GIIM Note: maturase Location: 511-73 0 bp Feature: gene Location: 1138-1410 bp Feature: gene Location: 1532-1756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QIAM01000077.1 Acidobacteria bacterium isolate gp1 AA129 14_0903_13_30cm_scaffold_4610485_curated, whole genome shotgun sequence (154957 bp)
Overview 1 RT 1: 40406-47966 bp Neighborhood of RT #1 [40406, 48181] TPR TPR TPR_2 TPR TPR TPR_2 selA_rel RVT-GII PRK09237 DUF362 Feature: gene Location: 40406-42061 bp Feature: domain Description: TPR Location: 40511-40784 bp Feature: domain Description: TPR Location: 4 0511-4 0784 bp Feature: domain Description: TPR Location: 40916-41180 bp Feature: domain Description: TPR Location: 4 0916-4 1180 bp Feature: domain Description: TPR_2 Location: 41216-41288 bp Feature: domain Description: TPR_2 Location: 4 1216-4 1288 bp Feature: domain Description: TPR Location: 41339-41612 bp Feature: domain Description: TPR Location: 4 1339-4 1612 bp Feature: domain Description: TPR Location: 41636-41921 bp Feature: domain Description: TPR Location: 4 1636-4 1921 bp Feature: domain Description: TPR_2 Location: 41942-42038 bp Feature: domain Description: TPR_2 Location: 4 194 2-4 2038 bp Feature: gene Location: 42277-43542 bp Feature: domain Description: selA_rel Location: 42415-43387 bp Feature: domain Description: selA_rel Location: 4 24 15-4 3387 bp Feature: gene Location: 44000-45394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44330-45020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 330-4 5020 bp Feature: gene Location: 45499-46857 bp Feature: domain Description: PRK09237 Location: 45601-46744 bp Feature: domain Description: PRK09237 Location: 4 5601-4 674 4 bp Feature: gene Location: 47021-48181 bp Feature: domain Description: DUF362 Location: 47354-47966 bp Feature: domain Description: DUF362 Location: 4 7354 -4 7966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), TPR_2 (pfam07719), selA_rel (TIGR01437), RVT-GII, PRK09237 (amidohydrolase/deacetylase family metallohydrolase), DUF362 (pfam04015)

Seq: QIAM01000084.1 Acidobacteria bacterium isolate gp1 AA129 14_0903_13_30cm_scaffold_5495129_curated, whole genome shotgun sequence (26688 bp)
Overview 1 RT 1: 2-3141 bp Neighborhood of RT #1 [2, 3176] RVT-GII Peptidase_M28 Feature: gene Location: 2-736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 -362 bp Feature: gene Location: 1075-1617 bp Feature: gene Location: 1902-3176 bp Feature: domain Description: Peptidase_M28 Location: 2679-3141 bp Feature: domain Description: Peptidase_M28 Location: 2679-3141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M28 (pfam04389), RVT-GII

Seq: QIAM01000097.1 Acidobacteria bacterium isolate gp1 AA129 14_0903_13_30cm_scaffold_7250718_curated, whole genome shotgun sequence (22391 bp)
Overview 1 RT 1: 2-2594 bp Neighborhood of RT #1 [2, 2594] RVT-GII PEP-CTERM Feature: gene Location: 2-1216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152-836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152-836 bp Feature: gene Location: 1681-2148 bp Feature: domain Description: PEP-CTERM Location: 2050-2101 bp Feature: domain Description: PEP-CTERM Location: 2050-2101 bp Feature: gene Location: 2307-2594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP-CTERM, RVT-GII

Seq: QIAM01000102.1 Acidobacteria bacterium isolate gp1 AA129 14_0903_13_30cm_scaffold_8157598_curated, whole genome shotgun sequence (46402 bp)
Overview 1 RT 1: 344-3721 bp Neighborhood of RT #1 [344, 4035] RVT-GII RVT-GII GIIM Sialidase_non-viral Feature: gene Location: 344-553 bp Feature: gene Location: 639-1217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942-1191 bp Feature: gene Location: 1168-1965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1195-1564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1195-1564 bp Feature: domain Description: GIIM Note: maturase Location: 1636-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1636-1855 bp Feature: gene Location: 2185-2367 bp Feature: gene Location: 2908-4035 bp Feature: domain Description: Sialidase_non-viral Location: 3067-3721 bp Feature: domain Description: Sialidase_non-viral Location: 3067 -37 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Sialidase_non-viral (cd15482)