myRT

myRT report for GCA_003225775.1_ASM322577v1

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Seq: QKNG01000001.1 Klebsiella pneumoniae strain Kp891, whole genome shotgun sequence (5332989 bp)
Overview 1 RT 1: 84337-91190 bp 2 RT 2: 2957022-2961129 bp 3 RT 3: 3092749-3095740 bp Neighborhood of RT #1 [84337, 91207] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Neighborhood of RT #2 [2957022, 2961131] DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [3092749, 3095740] Q RVT-GII PRK10597 Feature: gene Location: 84337-85002 bp Feature: domain Description: INT_P4_C Location: 84442-85000 bp Feature: domain Description: INT_P4_C Location: 84442-85000 bp Feature: gene Location: 85263-85703 bp Feature: domain Description: Integrase_1 Location: 85269-85485 bp Feature: domain Description: Integrase_1 Location: 85269-85485 bp Feature: gene Location: 85760-87838 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 86168-86612 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 861 68-8661 2 bp Feature: gene Location: 87838-90447 bp Feature: domain Description: FimD Location: 87895-90436 bp Feature: domain Description: FimD Location: 87895-90436 bp Feature: gene Location: 90479-91207 bp Feature: domain Description: FimC Location: 90527-91190 bp Feature: domain Description: FimC Location: 90527-91 1 90 bp Feature: gene Location: 2957022-2957264 bp Feature: domain Description: DinI Location: 2957073-2957253 bp Feature: domain Description: DinI Location: 2957073-2957253 bp Feature: gene Location: 2957279-2957425 bp Feature: gene Location: 2957878-2959365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2958283-2958973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2958283-2958973 bp Feature: gene Location: 2959444-2959863 bp Feature: domain Description: PRK10276 Location: 2959447-2959858 bp Feature: domain Description: PRK1 0276 Location: 2959447-2959858 bp Feature: gene Location: 2959866-2961131 bp Feature: domain Description: umuC Location: 2959869-2961129 bp Feature: domain Description: umuC Location: 2959869-2961 1 29 bp Feature: gene Location: 3092749-3093147 bp Feature: domain Description: Q Location: 3092752-3093139 bp Feature: domain Description: Q Location: 3092752-30931 39 bp Feature: gene Location: 3093642-3095129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3094047-3094737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3094047-3094737 bp Feature: gene Location: 3095208-3095441 bp Feature: domain Description: PRK10597 Location: 3095211-3095436 bp Feature: domain Description: PRK1 0597 Location: 309521 1 -3095436 bp Feature: gene Location: 3095519-3095740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Q (PHA02536)
PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: QKNG01000003.1 Klebsiella pneumoniae strain Kp891, whole genome shotgun sequence (63656 bp)
Overview 1 RT 1: 2978-6519 bp 2 RT 2: 16418-21443 bp Neighborhood of RT #1 [2978, 6519] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [16418, 21448] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 2978-3250 bp Feature: domain Description: InsE Location: 2987-3236 bp Feature: domain Description: InsE Location: 2 987-32 36 bp Feature: gene Location: 3306-3731 bp Feature: domain Description: PHA02517 Location: 3330-3666 bp Feature: domain Description: PHA02 517 Location: 3330-3666 bp Feature: gene Location: 4323-5846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4596-5328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4596-532 8 bp Feature: domain Description: GIIM Note: maturase Location: 5403-5601 bp Feature: domain Description: GIIM Note: maturase Location: 5403-5601 bp Feature: gene Location: 6011-6169 bp Feature: domain Description: PHA02517 Location: 6014-6134 bp Feature: domain Description: PHA02 517 Location: 6014-6134 bp Feature: gene Location: 6388-6519 bp Feature: gene Location: 16418-17689 bp Feature: domain Description: umuC Location: 16421-17681 bp Feature: domain Description: umuC Location: 1642 1-17681 bp Feature: gene Location: 17689-18501 bp Feature: domain Description: PRK10276 Location: 18121-18484 bp Feature: domain Description: PRK102 76 Location: 1812 1-18484 bp Feature: gene Location: 18526-20013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18931-19621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18931-1962 1 bp Feature: gene Location: 20082-20351 bp Feature: gene Location: 20483-21448 bp Feature: domain Description: ArdC Location: 20609-21443 bp Feature: domain Description: ArdC Location: 2 0609-2 1443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), ArdC (COG4227)