myRT

myRT report for GCA_003226565.1_ASM322656v1

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Seq: QKOE01000036.1 Azoarcus communis SWub3 = DSM 12120 strain SWub3 NODE_36_length_15495_cov_159.017569, whole genome shotgun sequence (15495 bp)
Overview 1 RT 1: 1-2582 bp Neighborhood of RT #1 [1, 2635] RVT-GII WD40 WD40 Feature: gene Location: 1-435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-1 66 bp Feature: gene Location: 636-1511 bp Feature: gene Location: 1514-2635 bp Feature: domain Description: WD40 Location: 1661-1823 bp Feature: domain Description: WD40 Location: 1 661 -1 823 bp Feature: domain Description: WD40 Location: 2195-2582 bp Feature: domain Description: WD40 Location: 21 95-2582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, WD40 (smart00320)

Seq: QKOE01000041.1 Azoarcus communis SWub3 = DSM 12120 strain SWub3 NODE_41_length_6603_cov_186.411828, whole genome shotgun sequence (6603 bp)
Overview 1 RT 1: 2164-6293 bp Neighborhood of RT #1 [2164, 6478] YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x RHS RVT-GII group_II_RT_mat YhhI YhhI Feature: gene Location: 2164-2373 bp Feature: gene Location: 2569-4128 bp Feature: domain Description: YD_repeat_2x Location: 2671-2752 bp Feature: domain Description: YD_repeat_2 x Location: 2 671-2 752 bp Feature: domain Description: YD_repeat_2x Location: 3148-3196 bp Feature: domain Description: YD_repeat_2 x Location: 3148-3196 bp Feature: domain Description: YD_repeat_2x Location: 3445-3529 bp Feature: domain Description: YD_repeat_2 x Location: 3445-352 9 bp Feature: domain Description: YD_repeat_2x Location: 3559-3622 bp Feature: domain Description: YD_repeat_2 x Location: 3559-362 2 bp Feature: domain Description: RHS Location: 3901-3970 bp Feature: domain Description: RHS Location: 3901-3970 bp Feature: gene Location: 4534-5271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4738-5263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4738-52 63 bp Feature: gene Location: 5313-5765 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5361-5652 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5361-5652 bp Feature: gene Location: 5864-6478 bp Feature: domain Description: YhhI Location: 5867-6002 bp Feature: domain Description: YhhI Location: 5867-6002 bp Feature: domain Description: YhhI Location: 6176-6293 bp Feature: domain Description: YhhI Location: 6176-62 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YD_repeat_2x (TIGR01643), RHS (pfam03527), RVT-GII, group_II_RT_mat (TIGR04416), YhhI (COG5433)

Seq: QKOE01000048.1 Azoarcus communis SWub3 = DSM 12120 strain SWub3 NODE_49_length_3511_cov_134.256501, whole genome shotgun sequence (3511 bp)
Overview 1 RT 1: 1-1287 bp Neighborhood of RT #1 [1, 1295] RVT-GII GIIM Dimer_Tnp_Tn5 PRK00222 Feature: gene Location: 1-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-199 bp Feature: domain Description: GIIM Note: maturase Location: 283-499 bp Feature: domain Description: GIIM Note: maturase Location: 283 -499 bp Feature: gene Location: 677-1054 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 761-1028 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 761-1028 bp Feature: gene Location: 1092-1295 bp Feature: domain Description: PRK00222 Location: 1104-1287 bp Feature: domain Description: PRK00222 Location: 1104-1287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Dimer_Tnp_Tn5 (pfam02281), PRK00222 (peptide-methionine (R)-S-oxide reductase MsrB)

Seq: QKOE01000070.1 Azoarcus communis SWub3 = DSM 12120 strain SWub3 NODE_71_length_1160_cov_282.521781, whole genome shotgun sequence (1160 bp)
Overview 1 RT 1: 371-1160 bp Neighborhood of RT #1 [371, 1159] RVT-GII Feature: gene Location: 371-1159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 575-1160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 575-1160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII