myRT

myRT report for GCA_003227855.1_ASM322785v1

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Seq: BGNY01000006.1 Klebsiella pneumoniae TUM15667 DNA, sequence006, whole genome shotgun sequence (178455 bp)
Overview 1 RT 1: 32207-39060 bp Neighborhood of RT #1 [32207, 39077] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32207-32872 bp Feature: domain Description: INT_P4_C Location: 32312-32870 bp Feature: domain Description: INT_P4_C Location: 3231 2-32870 bp Feature: gene Location: 33133-33573 bp Feature: domain Description: Integrase_1 Location: 33139-33355 bp Feature: domain Description: Integrase_1 Location: 331 39-33355 bp Feature: gene Location: 33630-35708 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34038-34482 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34038-34482 bp Feature: gene Location: 35708-38317 bp Feature: domain Description: FimD Location: 35765-38306 bp Feature: domain Description: FimD Location: 35765-38306 bp Feature: gene Location: 38349-39077 bp Feature: domain Description: FimC Location: 38397-39060 bp Feature: domain Description: FimC Location: 38397-39060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: BGNY01000069.1 Klebsiella pneumoniae TUM15667 DNA, sequence069, whole genome shotgun sequence (18202 bp)
Overview 1 RT 1: 1-6577 bp Neighborhood of RT #1 [1, 6693] RVT-Retrons COG0610 AAA_13 AAA_13 Feature: gene Location: 1-588 bp Feature: gene Location: 761-1861 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 902-1463 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 902 -1463 bp Feature: gene Location: 2403-5522 bp Feature: domain Description: COG0610 Location: 2487-5499 bp Feature: domain Description: COG0610 Location: 2 487-5499 bp Feature: gene Location: 5515-6693 bp Feature: domain Description: AAA_13 Location: 5608-5782 bp Feature: domain Description: AAA_13 Location: 5608-5782 bp Feature: domain Description: AAA_13 Location: 6004-6577 bp Feature: domain Description: AAA_13 Location: 6004-6577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), AAA_13 (pfam13166)