myRT

myRT report for GCA_003228945.1_ASM322894v1

Download annotations/find similar RTs

Seq: QIGX01001106.1 Planctomycetaceae bacterium isolate SZUA-138 Ga0063293_10019390, whole genome shotgun sequence (5942 bp)
Overview 1 RT 1: 132-5819 bp Neighborhood of RT #1 [132, 5839] InsE RVT-GII PinE Zn_ribbon_recom RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 132-491 bp Feature: domain Description: InsE Location: 186-444 bp Feature: domain Description: InsE Location: 1 86-444 bp Feature: gene Location: 741-986 bp Feature: gene Location: 1074-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1323-1389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 323-1 389 bp Feature: gene Location: 1559-3619 bp Feature: domain Description: PinE Location: 1607-2261 bp Feature: domain Description: PinE Location: 1 607-2261 bp Feature: domain Description: Zn_ribbon_recom Location: 2537-2693 bp Feature: domain Description: Zn_ribbon_recom Location: 2537-2693 bp Feature: gene Location: 3653-3955 bp Feature: gene Location: 4009-4854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4021-4483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4021 -4483 bp Feature: domain Description: GIIM Note: maturase Location: 4561-4768 bp Feature: domain Description: GIIM Note: maturase Location: 4561 -4768 bp Feature: gene Location: 4982-5503 bp Feature: domain Description: PHA02517 Location: 5039-5501 bp Feature: domain Description: PHA0251 7 Location: 5039-5501 bp Feature: gene Location: 5507-5839 bp Feature: domain Description: PHA02517 Location: 5510-5819 bp Feature: domain Description: PHA0251 7 Location: 551 0-581 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: QIGX01001039.1 Planctomycetaceae bacterium isolate SZUA-138 Ga0063293_10027297, whole genome shotgun sequence (5066 bp)
Overview 1 RT 1: 2273-5065 bp Neighborhood of RT #1 [2273, 5065] group_II_RT_mat RVT-UG21 Feature: gene Location: 2273-2530 bp Feature: gene Location: 2606-3001 bp Feature: gene Location: 3006-3995 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3111-3237 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3111-32 37 bp Feature: RT Description: RVT-UG21 Note: UG21 RT Location: 3411-3822 bp Feature: RT Description: RVT-UG2 1 Note: UG2 1 RT Location: 3411-382 2 bp Feature: gene Location: 4521-4892 bp Feature: gene Location: 4940-5065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG21

Seq: QIGX01000971.1 Planctomycetaceae bacterium isolate SZUA-138 Ga0063293_10032769, whole genome shotgun sequence (4395 bp)
Overview 1 RT 1: 103-4392 bp Neighborhood of RT #1 [103, 4392] RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM Feature: gene Location: 103-564 bp Feature: gene Location: 901-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123-1519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123 -1519 bp Feature: gene Location: 1675-1908 bp Feature: gene Location: 1905-3782 bp Feature: domain Description: Resolvase Location: 1938-2376 bp Feature: domain Description: Resolvase Location: 193 8-23 76 bp Feature: domain Description: Recombinase Location: 2466-2829 bp Feature: domain Description: Recombinase Location: 2466-2829 bp Feature: domain Description: Zn_ribbon_recom Location: 2871-3066 bp Feature: domain Description: Zn_ribbon_recom Location: 2871-3 066 bp Feature: gene Location: 3715-4143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3721-3799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 721-3 799 bp Feature: domain Description: GIIM Note: maturase Location: 3841-4039 bp Feature: domain Description: GIIM Note: maturase Location: 3 841-403 9 bp Feature: gene Location: 4198-4392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388)

Seq: QIGX01000447.1 Planctomycetaceae bacterium isolate SZUA-138 Ga0063293_10048415, whole genome shotgun sequence (3508 bp)
Overview 1 RT 1: 114-1705 bp Neighborhood of RT #1 [114, 1705] RVT-Retrons HTH_31 Feature: gene Location: 114-1100 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 240-774 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24 0-774 bp Feature: gene Location: 1079-1417 bp Feature: domain Description: HTH_31 Location: 1091-1232 bp Feature: domain Description: HTH_31 Location: 1091-1232 bp Feature: gene Location: 1457-1705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_31 (pfam13560)

Seq: QIGX01000947.1 Planctomycetaceae bacterium isolate SZUA-138 Ga0063293_10082136, whole genome shotgun sequence (2573 bp)
Overview 1 RT 1: 1-2569 bp Neighborhood of RT #1 [1, 2571] RVT-GII Resolvase Recombinase Zn_ribbon_recom SR_IS607_transposase_like KOG3867 Feature: gene Location: 1-828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706-829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706-829 bp Feature: gene Location: 520-2256 bp Feature: domain Description: Resolvase Location: 607-1048 bp Feature: domain Description: Resolvase Location: 607-1048 bp Feature: domain Description: Recombinase Location: 1135-1498 bp Feature: domain Description: Recombinase Location: 1135 -1498 bp Feature: domain Description: Zn_ribbon_recom Location: 1540-1741 bp Feature: domain Description: Zn_ribbon_recom Location: 15 40-1741 bp Feature: domain Description: SR_IS607_transposase_like Location: 1822-2059 bp Feature: domain Description: SR_IS607_transposase_like Location: 1822-205 9 bp Feature: gene Location: 2395-2571 bp Feature: domain Description: KOG3867 Location: 2434-2569 bp Feature: domain Description: KOG3867 Location: 2434-25 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), SR_IS607_transposase_like (cd03769), KOG3867 (KOG3867, Sulfatase )