myRT

myRT report for GCA_003232435.1_ASM323243v1

Download annotations/find similar RTs

Seq: QIJL01000140.1 Flavobacteriales bacterium isolate SZUA-72 Ga0063293_10027718, whole genome shotgun sequence (4838 bp)
Overview 1 RT 1: 82-4836 bp Neighborhood of RT #1 [82, 4836] Exo_endo_phos_2 RVT-UNC Feature: gene Location: 82-252 bp Feature: gene Location: 331-1422 bp Feature: gene Location: 1536-4298 bp Feature: domain Description: Exo_endo_phos_2 Location: 1779-2130 bp Feature: domain Description: Exo_endo_phos_2 Location: 1 779-21 30 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2982-3576 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2982-3576 bp Feature: gene Location: 4564-4836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Exo_endo_phos_2 (pfam14529), RVT-AbiA/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: QIJL01000644.1 Flavobacteriales bacterium isolate SZUA-72 Ga0063293_10028000, whole genome shotgun sequence (4808 bp)
Overview 1 RT 1: 411-3821 bp Neighborhood of RT #1 [411, 4543] PHD2_KMT2A_like L1-EN RVT-UNC Feature: gene Location: 411-1628 bp Feature: domain Description: PHD2_KMT2A_like Location: 447-531 bp Feature: domain Description: PHD2 _KMT2 A_like Location: 447-531 bp Feature: gene Location: 1640-4543 bp Feature: domain Description: L1-EN Location: 1718-2360 bp Feature: domain Description: L1-EN Location: 1718-2 360 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3215-3821 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 32 15-382 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHD2_KMT2A_like (cd15507), L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: QIJL01000205.1 Flavobacteriales bacterium isolate SZUA-72 Ga0063293_10030435, whole genome shotgun sequence (4584 bp)
Overview 1 RT 1: 768-4581 bp Neighborhood of RT #1 [768, 4581] GIY-YIG_PLEs RVT-UG19 Feature: gene Location: 768-3761 bp Feature: domain Description: GIY-YIG_PLEs Location: 1182-1437 bp Feature: domain Description: GIY-YIG_PLEs Location: 1182-143 7 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 3072-3303 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 3 072-3 3 03 bp Feature: gene Location: 3926-4072 bp Feature: gene Location: 4129-4581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_PLEs (cd10442), RVT-UG19

Seq: QIJL01000486.1 Flavobacteriales bacterium isolate SZUA-72 Ga0063293_10037294, whole genome shotgun sequence (4081 bp)
Overview 1 RT 1: 2446-3590 bp Neighborhood of RT #1 [2446, 3841] HTH_19 RVT-Retrons Feature: gene Location: 2446-2601 bp Feature: gene Location: 2643-2921 bp Feature: domain Description: HTH_19 Location: 2655-2823 bp Feature: domain Description: HTH_19 Location: 2655-2823 bp Feature: gene Location: 2921-3841 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3059-3590 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3059-3590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_19 (pfam12844), RVT-Retrons

Seq: QIJL01000347.1 Flavobacteriales bacterium isolate SZUA-72 Ga0063293_10061493, whole genome shotgun sequence (4040 bp)
Overview 1 RT 1: 365-4039 bp Neighborhood of RT #1 [365, 4039] HTH_34 RVT-GII GIIM Feature: gene Location: 365-1000 bp Feature: gene Location: 1105-1254 bp Feature: domain Description: HTH_34 Location: 1111-1249 bp Feature: domain Description: HTH_34 Location: 1111-1249 bp Feature: gene Location: 2321-3619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2585-3251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 85 -325 1 bp Feature: domain Description: GIIM Note: maturase Location: 3329-3533 bp Feature: domain Description: GIIM Note: maturase Location: 3329-35 33 bp Feature: gene Location: 3758-4039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_34 (pfam13601), RVT-GII, GIIM (pfam08388)

Seq: QIJL01000377.1 Flavobacteriales bacterium isolate SZUA-72 Ga0063293_10075864, whole genome shotgun sequence (3992 bp)
Overview 1 RT 1: 553-3860 bp Neighborhood of RT #1 [553, 3952] RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM Feature: gene Location: 553-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1324 bp Feature: gene Location: 1666-3390 bp Feature: domain Description: Resolvase Location: 1684-2119 bp Feature: domain Description: Resolvase Location: 16 84-2119 bp Feature: domain Description: Recombinase Location: 2212-2572 bp Feature: domain Description: Recombinase Location: 2212-2572 bp Feature: domain Description: Zn_ribbon_recom Location: 2614-2815 bp Feature: domain Description: Zn_ribbon_recom Location: 26 14-2815 bp Feature: gene Location: 3401-3952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404-3575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404-3575 bp Feature: domain Description: GIIM Note: maturase Location: 3665-3860 bp Feature: domain Description: GIIM Note: maturase Location: 36 6 5-386 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388)

Seq: QIJL01000663.1 Flavobacteriales bacterium isolate SZUA-72 Ga0063293_10079663, whole genome shotgun sequence (2620 bp)
Overview 1 RT 1: 1-2429 bp Neighborhood of RT #1 [1, 2461] COG3657 RVT-UG15 NTase_sub_bind Feature: gene Location: 1-138 bp Feature: domain Description: COG3657 Location: 4-139 bp Feature: domain Description: COG3657 Location: 4-139 bp Feature: gene Location: 348-1952 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 807-1203 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 807 -1203 bp Feature: gene Location: 2132-2461 bp Feature: domain Description: NTase_sub_bind Location: 2138-2429 bp Feature: domain Description: NTase_sub_bind Location: 2138-2429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3657 (Putative component of the toxin-antitoxin plasmid stabilization module ), RVT-UG15, NTase_sub_bind (pfam08780)