myRT

myRT report for GCA_003232445.1_ASM323244v1

Download annotations/find similar RTs

Seq: QIJM01000459.1 Paraglaciecola arctica isolate SZUA-71 Ga0063293_10006365, whole genome shotgun sequence (10986 bp)
Overview 1 RT 1: 3906-10105 bp Neighborhood of RT #1 [3906, 10105] HsdM RMtype1_S_LdeBORF1052P-TRD2-CR2 RMtype1_S_LdeBORF1052P-TRD2-CR2 RVT-Retrons Feature: gene Location: 3906-5540 bp Feature: domain Description: HsdM Location: 3945-5514 bp Feature: domain Description: HsdM Location: 3945-551 4 bp Feature: gene Location: 5530-6735 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 5545-6118 bp Feature: domain Description: RMtype1 _S_LdeBORF1 052P-TRD2-CR2 Location: 5545-61 1 8 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 6430-6712 bp Feature: domain Description: RMtype1 _S_LdeBORF1 052P-TRD2-CR2 Location: 6430-671 2 bp Feature: gene Location: 6913-8673 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7048-7681 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7048-7681 bp Feature: gene Location: 8706-8876 bp Feature: gene Location: 9305-10105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_LdeBORF1052P-TRD2-CR2 (cd17278), RVT-Retrons

Seq: QIJM01000558.1 Paraglaciecola arctica isolate SZUA-71 Ga0063293_10062940, whole genome shotgun sequence (3141 bp)
Overview 1 RT 1: 62-3100 bp Neighborhood of RT #1 [62, 3111] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 62-379 bp Feature: domain Description: InsE Location: 65-356 bp Feature: domain Description: InsE Location: 65-356 bp Feature: gene Location: 381-530 bp Feature: gene Location: 895-2145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-1756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-1756 bp Feature: domain Description: GIIM Note: maturase Location: 1837-2050 bp Feature: domain Description: GIIM Note: maturase Location: 1837-2 050 bp Feature: gene Location: 2182-3111 bp Feature: domain Description: PHA02517 Location: 2308-3100 bp Feature: domain Description: PHA02 517 Location: 2 308-3100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: QIJM01000093.1 Paraglaciecola arctica isolate SZUA-71 Ga0063293_10108880, whole genome shotgun sequence (2174 bp)
Overview 1 RT 1: 262-2172 bp Neighborhood of RT #1 [262, 2172] RVT-UG14 Feature: gene Location: 262-1809 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 694-1180 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 694-1180 bp Feature: gene Location: 2026-2172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG14

Seq: QIJM01000680.1 Paraglaciecola arctica isolate SZUA-71 Ga0063293_10133028, whole genome shotgun sequence (3483 bp)
Overview 1 RT 1: 630-3199 bp Neighborhood of RT #1 [630, 3270] COG1569 RVT-GII GIIM Feature: gene Location: 630-1055 bp Feature: domain Description: COG1569 Location: 633-1032 bp Feature: domain Description: COG1569 Location: 633-1032 bp Feature: gene Location: 1039-1572 bp Feature: gene Location: 1939-3270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2224-2914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2224 -2914 bp Feature: domain Description: GIIM Note: maturase Location: 2977-3199 bp Feature: domain Description: GIIM Note: maturase Location: 2977-3199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1569 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-GII, GIIM (pfam08388)