myRT

myRT report for GCA_003232975.1_ASM323297v1

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Seq: QIKI01000286.1 Rhizobiales bacterium isolate SZUA-49 Ga0063293_10004483, whole genome shotgun sequence (13180 bp)
Overview 1 RT 1: 285-4102 bp Neighborhood of RT #1 [285, 4170] RVT-Retrons COG4422 tcm_partner Feature: gene Location: 285-560 bp Feature: gene Location: 590-877 bp Feature: gene Location: 798-2522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 933-1560 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 933-1 560 bp Feature: gene Location: 2538-3299 bp Feature: domain Description: COG4422 Location: 2553-3285 bp Feature: domain Description: COG4422 Location: 2553-3285 bp Feature: gene Location: 3283-4170 bp Feature: domain Description: tcm_partner Location: 3316-4102 bp Feature: domain Description: tcm_partner Location: 331 6-41 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG4422 (Bacteriophage protein gp37 ), tcm_partner (TIGR04474)

Seq: QIKI01000251.1 Rhizobiales bacterium isolate SZUA-49 Ga0063293_10017005, whole genome shotgun sequence (6387 bp)
Overview 1 RT 1: 1367-4225 bp Neighborhood of RT #1 [1367, 4278] DDE_Tnp_IS66 RVT-GII GIIM DUF433 COG4190 Feature: gene Location: 1367-1615 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1376-1592 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1376-1592 bp Feature: gene Location: 1726-1917 bp Feature: gene Location: 2063-3382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2336-2993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 336-2 993 bp Feature: domain Description: GIIM Note: maturase Location: 3077-3305 bp Feature: domain Description: GIIM Note: maturase Location: 3077-3305 bp Feature: gene Location: 3561-3791 bp Feature: domain Description: DUF433 Location: 3579-3744 bp Feature: domain Description: DUF433 Location: 3579-3744 bp Feature: gene Location: 3916-4278 bp Feature: domain Description: COG4190 Location: 3928-4225 bp Feature: domain Description: COG4190 Location: 392 8-42 2 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DUF433 (pfam04255), COG4190 (Predicted transcriptional regulator )

Seq: QIKI01000087.1 Rhizobiales bacterium isolate SZUA-49 Ga0063293_10033077, whole genome shotgun sequence (4371 bp)
Overview 1 RT 1: 3-1612 bp Neighborhood of RT #1 [3, 1612] RVT-Retrons Feature: gene Location: 3-374 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 105-348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 105-3 48 bp Feature: gene Location: 371-1324 bp Feature: gene Location: 1427-1612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: QIKI01000435.1 Rhizobiales bacterium isolate SZUA-49 Ga0063293_10052906, whole genome shotgun sequence (3331 bp)
Overview 1 RT 1: 1762-3301 bp Neighborhood of RT #1 [1762, 3330] HTH_17 DUF241 RVT-UNC Feature: gene Location: 1762-2334 bp Feature: gene Location: 2422-2631 bp Feature: domain Description: HTH_17 Location: 2437-2590 bp Feature: domain Description: HTH_17 Location: 24 37-2590 bp Feature: gene Location: 2650-3330 bp Feature: domain Description: DUF241 Location: 2707-2998 bp Feature: domain Description: DUF24 1 Location: 2707-2998 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3052-3301 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3052-3301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), DUF241 (pfam03087), RVT-UG10/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: QIKI01000331.1 Rhizobiales bacterium isolate SZUA-49 Ga0063293_10069098, whole genome shotgun sequence (2849 bp)
Overview 1 RT 1: 98-2766 bp Neighborhood of RT #1 [98, 2846] RVT-Retrons RMtype1_S_Eco933I-TRD2-CR2_like Feature: gene Location: 98-1564 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 779-1337 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 779-1337 bp Feature: gene Location: 1561-2130 bp Feature: gene Location: 2127-2846 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 2208-2766 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 2208-2766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, RMtype1_S_Eco933I-TRD2-CR2_like (cd17253)

Seq: QIKI01000588.1 Rhizobiales bacterium isolate SZUA-49 Ga0063293_10075222, whole genome shotgun sequence (2709 bp)
Overview 1 RT 1: 562-2706 bp Neighborhood of RT #1 [562, 2708] RelE RVT-GII GIIM HNHc RVT_N RVT-GII Feature: gene Location: 562-879 bp Feature: domain Description: RelE Location: 682-862 bp Feature: domain Description: RelE Location: 6 82-86 2 bp Feature: gene Location: 924-1091 bp Feature: gene Location: 1140-2339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1146-1653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1146 -16 53 bp Feature: domain Description: GIIM Note: maturase Location: 1704-1938 bp Feature: domain Description: GIIM Note: maturase Location: 1704-1938 bp Feature: domain Description: HNHc Note: nucleases Location: 2088-2292 bp Feature: domain Description: HNHc Note: nucleases Location: 2088-2292 bp Feature: gene Location: 2343-2708 bp Feature: domain Description: RVT_N Location: 2349-2505 bp Feature: domain Description: RVT_N Location: 2349-2505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2565-2706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256 5-2706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655)