myRT

myRT report for GCA_003235365.1_ASM323536v1

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Seq: QJWJ01000031.1 Deltaproteobacteria bacterium isolate SZUA-265 scaffold_218010, whole genome shotgun sequence (2561 bp)
Overview 1 RT 1: 2-2546 bp Neighborhood of RT #1 [2, 2560] RVT-GII GIIM PRK08673 Feature: gene Location: 2-151 bp Feature: gene Location: 711-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 43-1 797 bp Feature: domain Description: GIIM Note: maturase Location: 1872-2082 bp Feature: domain Description: GIIM Note: maturase Location: 1 872-2082 bp Feature: gene Location: 2351-2560 bp Feature: domain Description: PRK08673 Location: 2354-2546 bp Feature: domain Description: PRK08673 Location: 2354-2546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK08673 (3-deoxy-7-phosphoheptulonate synthase; Reviewed)

Seq: QJWJ01000534.1 Deltaproteobacteria bacterium isolate SZUA-265 scaffold_35016, whole genome shotgun sequence (6580 bp)
Overview 1 RT 1: 361-4939 bp Neighborhood of RT #1 [361, 4939] cas2 CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III AraC_binding HTH_18 HTH_AraC Feature: gene Location: 361-702 bp Feature: domain Description: cas2 Location: 469-679 bp Feature: domain Description: cas2 Location: 469-679 bp Feature: gene Location: 725-3595 bp Feature: domain Description: CRISPR_Cas6 Location: 1217-1538 bp Feature: domain Description: CRISPR_Cas6 Location: 12 17-1538 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1793-2384 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1793-2 384 bp Feature: domain Description: Cas1_I-II-III Location: 2615-3551 bp Feature: domain Description: Cas1_I-II-III Location: 2 615-3551 bp Feature: gene Location: 3806-4648 bp Feature: domain Description: AraC_binding Location: 3893-4196 bp Feature: domain Description: AraC_binding Location: 3893-4196 bp Feature: domain Description: HTH_18 Location: 4304-4397 bp Feature: domain Description: HTH_18 Location: 4304-4397 bp Feature: domain Description: HTH_AraC Location: 4526-4613 bp Feature: domain Description: HTH_AraC Location: 452 6-4613 bp Feature: gene Location: 4757-4939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas2 (TIGR01573), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), AraC_binding (pfam02311), HTH_18 (pfam12833), HTH_AraC (pfam00165)

Seq: QJWJ01000100.1 Deltaproteobacteria bacterium isolate SZUA-265 scaffold_53804, whole genome shotgun sequence (5290 bp)
Overview 1 RT 1: 3-5287 bp Neighborhood of RT #1 [3, 5287] RVT-CRISPR-like Cu-binding_MopE Cu-binding_MopE Cu-binding_MopE Cu-binding_MopE Cu-binding_MopE Cu-binding_MopE Feature: gene Location: 3-608 bp Feature: gene Location: 605-1918 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 827-1460 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 827-1460 bp Feature: gene Location: 2231-4405 bp Feature: domain Description: Cu-binding_MopE Location: 2681-2729 bp Feature: domain Description: Cu-binding_MopE Location: 2681-2729 bp Feature: domain Description: Cu-binding_MopE Location: 2729-2837 bp Feature: domain Description: Cu-binding_MopE Location: 2729-283 7 bp Feature: domain Description: Cu-binding_MopE Location: 2885-2945 bp Feature: domain Description: Cu-binding_MopE Location: 2885-2945 bp Feature: domain Description: Cu-binding_MopE Location: 3125-3182 bp Feature: domain Description: Cu-binding_MopE Location: 3 125-3 182 bp Feature: domain Description: Cu-binding_MopE Location: 3245-3290 bp Feature: domain Description: Cu-binding_MopE Location: 3 245-3 290 bp Feature: domain Description: Cu-binding_MopE Location: 3347-3392 bp Feature: domain Description: Cu-binding_MopE Location: 3 3 47-3 3 92 bp Feature: gene Location: 4433-5287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cu-binding_MopE (pfam11617)