myRT

myRT report for GCA_003241705.1_ASM324170v1

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Seq: QFPQ01000270.1 Stenotrophomonas acidaminiphila isolate S2_005_003_R2_40 S2_005_003_R2_scaffold_11804, whole genome shotgun sequence (6024 bp)
Overview 1 RT 1: 201-5866 bp Neighborhood of RT #1 [201, 5866] yjeT YcjD RVT_N RVT-GII GIIM HNHc PRK01117 Feature: gene Location: 201-401 bp Feature: domain Description: yjeT Location: 222-399 bp Feature: domain Description: yjeT Location: 222-399 bp Feature: gene Location: 569-967 bp Feature: domain Description: YcjD Location: 590-905 bp Feature: domain Description: YcjD Location: 590-905 bp Feature: gene Location: 2145-3848 bp Feature: domain Description: RVT_N Location: 2205-2448 bp Feature: domain Description: RVT_N Location: 2205-2448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2493-3141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2493-31 41 bp Feature: domain Description: GIIM Note: maturase Location: 3192-3426 bp Feature: domain Description: GIIM Note: maturase Location: 31 92-3426 bp Feature: domain Description: HNHc Note: nucleases Location: 3639-3798 bp Feature: domain Description: HNHc Note: nucleases Location: 3639-3798 bp Feature: gene Location: 4067-5311 bp Feature: domain Description: PRK01117 Location: 4076-5306 bp Feature: domain Description: PRK01 1 1 7 Location: 4076-5306 bp Feature: gene Location: 5510-5866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT yjeT (COG3242), YcjD (COG2852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK01117 (adenylosuccinate synthetase; Provisional)

Seq: QFPQ01000376.1 Stenotrophomonas acidaminiphila isolate S2_005_003_R2_40 S2_005_003_R2_scaffold_17004, whole genome shotgun sequence (3074 bp)
Overview 1 RT 1: 2-3072 bp Neighborhood of RT #1 [2, 3071] gluta_reduc_1 RVT_N RVT-GII GIIM HNHc hutG_amidohyd Feature: gene Location: 2-133 bp Feature: domain Description: gluta_reduc_1 Location: 8-131 bp Feature: domain Description: gluta_reduc_1 Location: 8-131 bp Feature: gene Location: 606-737 bp Feature: gene Location: 1043-2746 bp Feature: domain Description: RVT_N Location: 1094-1331 bp Feature: domain Description: RVT_N Location: 1094-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1382-2030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1382 -2 030 bp Feature: domain Description: GIIM Note: maturase Location: 2093-2315 bp Feature: domain Description: GIIM Note: maturase Location: 2 093-2 315 bp Feature: domain Description: HNHc Note: nucleases Location: 2558-2699 bp Feature: domain Description: HNHc Note: nucleases Location: 2 558-2 699 bp Feature: gene Location: 2805-3071 bp Feature: domain Description: hutG_amidohyd Location: 2835-3072 bp Feature: domain Description: hutG_amidohyd Location: 2 835-3072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gluta_reduc_1 (TIGR01421), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), hutG_amidohyd (TIGR02017)

Seq: QFPQ01000389.1 Stenotrophomonas acidaminiphila isolate S2_005_003_R2_40 S2_005_003_R2_scaffold_17745, whole genome shotgun sequence (2983 bp)
Overview 1 RT 1: 181-2982 bp Neighborhood of RT #1 [181, 2982] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 181-1884 bp Feature: domain Description: RVT_N Location: 241-484 bp Feature: domain Description: RVT_N Location: 241-484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529-1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529-1177 bp Feature: domain Description: GIIM Note: maturase Location: 1228-1462 bp Feature: domain Description: GIIM Note: maturase Location: 1228-1462 bp Feature: domain Description: HNHc Note: nucleases Location: 1705-1846 bp Feature: domain Description: HNHc Note: nucleases Location: 1705-1846 bp Feature: gene Location: 2506-2982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QFPQ01000049.1 Stenotrophomonas acidaminiphila isolate S2_005_003_R2_40 S2_005_003_R2_scaffold_2725, whole genome shotgun sequence (23359 bp)
Overview 1 RT 1: 390-9317 bp Neighborhood of RT #1 [390, 9334] NadF AAA_23 RVT-UG5 COG0610 COG0610 RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like RMtype1_S_Vch69ORF1407P_TRD2-CR2_like Feature: gene Location: 390-1325 bp Feature: domain Description: NadF Location: 642-1005 bp Feature: domain Description: NadF Location: 64 2-1005 bp Feature: gene Location: 1332-1676 bp Feature: domain Description: AAA_23 Location: 1347-1500 bp Feature: domain Description: AAA_23 Location: 134 7-1500 bp Feature: gene Location: 1985-5065 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2441-2882 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24 4 1-2882 bp Feature: gene Location: 5125-8352 bp Feature: domain Description: COG0610 Location: 5158-6847 bp Feature: domain Description: COG0610 Location: 5158-684 7 bp Feature: domain Description: COG0610 Location: 7057-8221 bp Feature: domain Description: COG0610 Location: 7057-8221 bp Feature: gene Location: 8378-9334 bp Feature: domain Description: RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like Location: 8447-8690 bp Feature: domain Description: RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like Location: 84 4 7-8690 bp Feature: domain Description: RMtype1_S_Vch69ORF1407P_TRD2-CR2_like Location: 8747-9317 bp Feature: domain Description: RMtype1_S_Vch69ORF14 07P_TRD2-CR2_like Location: 874 7-9317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NadF (COG0061), AAA_23 (pfam13476), RVT-UG5, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like (cd17515), RMtype1_S_Vch69ORF1407P_TRD2-CR2_like (cd17501)