myRT

myRT report for GCA_003242115.1_ASM324211v1

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Seq: QBMP01000020.1 Phormidesmis priestleyi isolate ULC027bin1 scaffold20_size26604, whole genome shotgun sequence (26604 bp)
Overview 1 RT 1: 2080-10401 bp Neighborhood of RT #1 [2080, 10418] cya_phycin_syn PutA_N Pro_dh D1pyr5carbox2 RVT-DGRs Avd_like YfmG Feature: gene Location: 2080-4854 bp Feature: domain Description: cya_phycin_syn Location: 2086-4696 bp Feature: domain Description: cya_phycin_syn Location: 2086-4696 bp Feature: gene Location: 5025-8066 bp Feature: domain Description: PutA_N Location: 5091-5436 bp Feature: domain Description: PutA_N Location: 5091 -5436 bp Feature: domain Description: Pro_dh Location: 5466-6381 bp Feature: domain Description: Pro_dh Location: 5466-6381 bp Feature: domain Description: D1pyr5carbox2 Location: 6519-8025 bp Feature: domain Description: D1 pyr5carbox2 Location: 651 9-8025 bp Feature: gene Location: 8247-9077 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8457-8991 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8457-8991 bp Feature: gene Location: 9040-9417 bp Feature: domain Description: Avd_like Location: 9058-9364 bp Feature: domain Description: Avd_like Location: 9058-9364 bp Feature: gene Location: 9570-10418 bp Feature: domain Description: YfmG Location: 9630-10401 bp Feature: domain Description: YfmG Location: 9630-1 0401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cya_phycin_syn (TIGR02068), PutA_N (pfam18083), Pro_dh (pfam01619), D1pyr5carbox2 (TIGR01237), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: QBMP01000034.1 Phormidesmis priestleyi isolate ULC027bin1 scaffold34_size22387, whole genome shotgun sequence (22387 bp)
Overview 1 RT 1: 923-5617 bp Neighborhood of RT #1 [923, 5667] 23S_rRNA_IVP Cas2_I_II_III RVT-CRISPR Cas1_I-II-III AAA_16 clan_AA_DTGF Feature: gene Location: 923-1339 bp Feature: domain Description: 23S_rRNA_IVP Location: 980-1280 bp Feature: domain Description: 2 3S_rRNA_IVP Location: 980-12 80 bp Feature: gene Location: 1381-1659 bp Feature: domain Description: Cas2_I_II_III Location: 1390-1621 bp Feature: domain Description: Cas2 _I_II_III Location: 1390-162 1 bp Feature: gene Location: 1659-3728 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1944-2553 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1944-2 553 bp Feature: domain Description: Cas1_I-II-III Location: 2730-3687 bp Feature: domain Description: Cas1_I-II-III Location: 2 730-3687 bp Feature: gene Location: 3787-5226 bp Feature: domain Description: AAA_16 Location: 4099-4420 bp Feature: domain Description: AAA_16 Location: 4099-442 0 bp Feature: gene Location: 5248-5667 bp Feature: domain Description: clan_AA_DTGF Location: 5356-5617 bp Feature: domain Description: clan_AA_DTGF Location: 5356-5617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 23S_rRNA_IVP (pfam05635), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), AAA_16 (pfam13191), clan_AA_DTGF

Seq: QBMP01000409.1 Phormidesmis priestleyi isolate ULC027bin1 scaffold409_size3156, whole genome shotgun sequence (3156 bp)
Overview 1 RT 1: 2-3090 bp Neighborhood of RT #1 [2, 3155] RVT_N RVT-GII SR_ResInv SdrD_B CarboxypepD_reg Feature: gene Location: 2-1087 bp Feature: domain Description: RVT_N Location: 155-401 bp Feature: domain Description: RVT_N Location: 155-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1088 bp Feature: gene Location: 1547-1945 bp Feature: domain Description: SR_ResInv Location: 1556-1898 bp Feature: domain Description: SR_ResInv Location: 1556-1898 bp Feature: gene Location: 2103-3155 bp Feature: domain Description: SdrD_B Location: 2610-2796 bp Feature: domain Description: SdrD_B Location: 2610-2796 bp Feature: domain Description: CarboxypepD_reg Location: 2892-3090 bp Feature: domain Description: CarboxypepD_reg Location: 2892-3 090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, SR_ResInv (cd03768), SdrD_B (pfam17210), CarboxypepD_reg (pfam13620)

Seq: QBMP01000438.1 Phormidesmis priestleyi isolate ULC027bin1 scaffold438_size2507, whole genome shotgun sequence (2507 bp)
Overview 1 RT 1: 3-1686 bp Neighborhood of RT #1 [3, 2318] RVT-CRISPR Csx1_III-U Cas_csx3 Feature: gene Location: 3-485 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 252-486 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 252-4 86 bp Feature: gene Location: 524-1357 bp Feature: domain Description: Csx1_III-U Location: 953-1277 bp Feature: domain Description: Csx1_III-U Location: 953-1277 bp Feature: gene Location: 1440-2318 bp Feature: domain Description: Cas_csx3 Location: 1470-1686 bp Feature: domain Description: Cas_csx3 Location: 14 70-1686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Csx1_III-U (cl21570), Cas_csx3 (pfam09620)