myRT

myRT report for GCA_003242955.1_ASM324295v1

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Seq: QJPH01000406.1 Candidatus Methyloumidiphilus alinensis isolate AMbin10 contig03600, whole genome shotgun sequence (29458 bp)
Overview 1 RT 1: 3189-13287 bp Neighborhood of RT #1 [3189, 13313] Avd_like RVT-DGRs COG5635 YfmG ParAB_family TPR_12 COG5635 FGE-sulfatase Feature: gene Location: 3189-3401 bp Feature: gene Location: 3708-4043 bp Feature: domain Description: Avd_like Location: 3717-4029 bp Feature: domain Description: Avd_like Location: 371 7-4029 bp Feature: gene Location: 4066-5142 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4273-4921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4273-4921 bp Feature: gene Location: 5259-8054 bp Feature: domain Description: COG5635 Location: 5784-7062 bp Feature: domain Description: COG5635 Location: 5784-7062 bp Feature: domain Description: YfmG Location: 7254-8028 bp Feature: domain Description: YfmG Location: 7254-8028 bp Feature: gene Location: 8343-13313 bp Feature: domain Description: ParAB_family Location: 8394-9078 bp Feature: domain Description: ParAB_family Location: 8394-9078 bp Feature: domain Description: TPR_12 Location: 9792-9990 bp Feature: domain Description: TPR_1 2 Location: 9792-9990 bp Feature: domain Description: COG5635 Location: 10971-12294 bp Feature: domain Description: COG5635 Location: 1 0971 -1 2294 bp Feature: domain Description: FGE-sulfatase Location: 12651-13287 bp Feature: domain Description: FGE-sulfatase Location: 1 2651 -1 3287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262), ParAB_family (cd02042), TPR_12 (pfam13424), FGE-sulfatase (pfam03781)

Seq: QJPH01000531.1 Candidatus Methyloumidiphilus alinensis isolate AMbin10 contig06075, whole genome shotgun sequence (18858 bp)
Overview 1 RT 1: 9777-14399 bp Neighborhood of RT #1 [9777, 14431] DUF820 YfmG RVT-DGRs COG4249 pfam03781 DUF820 Feature: gene Location: 9777-10346 bp Feature: domain Description: DUF820 Location: 9849-10308 bp Feature: domain Description: DUF82 0 Location: 9849-10308 bp Feature: gene Location: 10574-10765 bp Feature: domain Description: YfmG Location: 10577-10682 bp Feature: domain Description: YfmG Location: 10577-10682 bp Feature: gene Location: 10781-11626 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10787-11411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10787-11411 bp Feature: gene Location: 11831-13741 bp Feature: domain Description: COG4249 Location: 11927-12611 bp Feature: domain Description: COG42 49 Location: 1192 7-12 611 bp Feature: domain Description: pfam03781 Location: 12947-13733 bp Feature: domain Description: pfam03781 Location: 12 947-13733 bp Feature: gene Location: 13871-14431 bp Feature: domain Description: DUF820 Location: 13943-14399 bp Feature: domain Description: DUF82 0 Location: 13943-14399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, YfmG (COG1262), RVT-DGRs, COG4249 (Uncharacterized protein, contains caspase domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: QJPH01000261.1 Candidatus Methyloumidiphilus alinensis isolate AMbin10 contig07368, whole genome shotgun sequence (15863 bp)
Overview 1 RT 1: 2487-5386 bp Neighborhood of RT #1 [2487, 5386] YfmG RVT-DGRs Hrd Feature: gene Location: 2487-3410 bp Feature: domain Description: YfmG Location: 2583-3399 bp Feature: domain Description: YfmG Location: 2583 -3 3 99 bp Feature: gene Location: 3424-3747 bp Feature: gene Location: 3725-4744 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3935-4526 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 93 5-4526 bp Feature: gene Location: 4741-5223 bp Feature: domain Description: Hrd Location: 4993-5191 bp Feature: domain Description: Hrd Location: 4993 -5191 bp Feature: gene Location: 5231-5386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: QJPH01000196.1 Candidatus Methyloumidiphilus alinensis isolate AMbin10 contig09232, whole genome shotgun sequence (12676 bp)
Overview 1 RT 1: 419-4206 bp Neighborhood of RT #1 [419, 4256] arc_metj arc_metj MobC VirD2 RVT-DGRs Avd_like HRDC Feature: gene Location: 419-976 bp Feature: domain Description: arc_metj Location: 422-533 bp Feature: domain Description: arc_metj Location: 4 22-533 bp Feature: domain Description: arc_metj Location: 614-725 bp Feature: domain Description: arc_metj Location: 614 -725 bp Feature: domain Description: MobC Location: 779-863 bp Feature: domain Description: MobC Location: 779-863 bp Feature: gene Location: 963-2015 bp Feature: domain Description: VirD2 Location: 1023-1776 bp Feature: domain Description: VirD2 Location: 1023-1776 bp Feature: gene Location: 2382-3395 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2589-3189 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2589-3189 bp Feature: gene Location: 3392-3751 bp Feature: domain Description: Avd_like Location: 3425-3731 bp Feature: domain Description: Avd_like Location: 34 25-3731 bp Feature: gene Location: 3738-4256 bp Feature: domain Description: HRDC Location: 4014-4206 bp Feature: domain Description: HRDC Location: 4 014 -4 206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), MobC (pfam05713), VirD2 (COG3843), RVT-DGRs, Avd_like (cd16376), HRDC (smart00341)

Seq: QJPH01000200.1 Candidatus Methyloumidiphilus alinensis isolate AMbin10 contig09747, whole genome shotgun sequence (12020 bp)
Overview 1 RT 1: 2308-8184 bp Neighborhood of RT #1 [2308, 8396] YfmG RVT-DGRs Hrd YfmG Feature: gene Location: 2308-2619 bp Feature: gene Location: 2660-3526 bp Feature: domain Description: YfmG Location: 2771-3443 bp Feature: domain Description: YfmG Location: 2771-3443 bp Feature: gene Location: 3822-4829 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4032-4623 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4032-4623 bp Feature: gene Location: 4810-5313 bp Feature: domain Description: Hrd Location: 5065-5275 bp Feature: domain Description: Hrd Location: 5 065 -5 275 bp Feature: gene Location: 5310-8396 bp Feature: domain Description: YfmG Location: 7476-8184 bp Feature: domain Description: YfmG Location: 7476-8184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: QJPH01000428.1 Candidatus Methyloumidiphilus alinensis isolate AMbin10 contig11061, whole genome shotgun sequence (10641 bp)
Overview 1 RT 1: 2-3808 bp Neighborhood of RT #1 [2, 3808] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cas1_I-II-III XerC Feature: gene Location: 2-352 bp Feature: domain Description: Cas2_I_II_III Location: 14-122 bp Feature: domain Description: Cas2_I_II_III Location: 14-122 bp Feature: gene Location: 460-2298 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 646-1240 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6 46 -1240 bp Feature: domain Description: Cas1_I-II-III Location: 1591-1813 bp Feature: domain Description: Cas1_I-II-III Location: 1591-1813 bp Feature: domain Description: Cas1_I-II-III Location: 1870-2188 bp Feature: domain Description: Cas1_I-II-III Location: 1870-2188 bp Feature: gene Location: 2436-3530 bp Feature: domain Description: XerC Location: 2640-3426 bp Feature: domain Description: XerC Location: 26 40-3426 bp Feature: gene Location: 3623-3808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), XerC (COG4973)

Seq: QJPH01000272.1 Candidatus Methyloumidiphilus alinensis isolate AMbin10 contig12405, whole genome shotgun sequence (9531 bp)
Overview 1 RT 1: 876-8074 bp Neighborhood of RT #1 [876, 8394] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III TIGR03986 Feature: gene Location: 876-1112 bp Feature: gene Location: 1602-1880 bp Feature: domain Description: Cas2_I_II_III Location: 1614-1827 bp Feature: domain Description: Cas2_I_II_III Location: 1614-1827 bp Feature: gene Location: 2054-5071 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3218-3806 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3218-3806 bp Feature: domain Description: Cas1_I-II-III Location: 4124-5024 bp Feature: domain Description: Cas1_I-II-III Location: 4124-5024 bp Feature: gene Location: 5073-5909 bp Feature: gene Location: 5968-8394 bp Feature: domain Description: TIGR03986 Location: 6145-8074 bp Feature: domain Description: TIGR03986 Location: 6145-807 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), TIGR03986 (CRISPR-associated protein)

Seq: QJPH01000501.1 Candidatus Methyloumidiphilus alinensis isolate AMbin10 contig25282, whole genome shotgun sequence (4693 bp)
Overview 1 RT 1: 2865-4664 bp Neighborhood of RT #1 [2865, 4690] Avd_like RVT-DGRs Bac_DNA_binding Feature: gene Location: 2865-3218 bp Feature: domain Description: Avd_like Location: 2892-3198 bp Feature: domain Description: Avd_like Location: 28 92-3198 bp Feature: gene Location: 3269-3664 bp Feature: gene Location: 3558-3968 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3618-3762 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3618 -3762 bp Feature: gene Location: 4403-4690 bp Feature: domain Description: Bac_DNA_binding Location: 4415-4664 bp Feature: domain Description: Bac_DNA_binding Location: 4415-4664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, Bac_DNA_binding (pfam00216)

Seq: QJPH01000515.1 Candidatus Methyloumidiphilus alinensis isolate AMbin10 contig60839, whole genome shotgun sequence (1928 bp)
Overview 1 RT 1: 3-1636 bp Neighborhood of RT #1 [3, 1839] pfam03781 RVT-DGRs Feature: gene Location: 3-650 bp Feature: domain Description: pfam03781 Location: 6-627 bp Feature: domain Description: pfam03781 Location: 6-627 bp Feature: gene Location: 790-1839 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 988-1636 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9 88-1636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs