myRT

myRT report for GCA_003243445.1_ASM324344v1

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Seq: QFQQ01000068.1 Citrobacter freundii isolate S2_003_000_R2_13 S2_003_000_R2_scaffold_1197, whole genome shotgun sequence (34059 bp)
Overview 1 RT 1: 28472-33999 bp Neighborhood of RT #1 [28472, 33999] CBM_4_9 I-set I-set CHU_C PLN02644 RVT-Retrons Feature: gene Location: 28472-30403 bp Feature: domain Description: CBM_4_9 Location: 28811-29054 bp Feature: domain Description: CBM_4_9 Location: 2881 1 -29054 bp Feature: domain Description: I-set Location: 29192-29405 bp Feature: domain Description: I-set Location: 291 92-29405 bp Feature: domain Description: I-set Location: 29531-29642 bp Feature: domain Description: I-set Location: 29531 -29642 bp Feature: domain Description: CHU_C Location: 30149-30389 bp Feature: domain Description: CHU_C Location: 301 49-30389 bp Feature: gene Location: 30707-31885 bp Feature: domain Description: PLN02644 Location: 30713-31883 bp Feature: domain Description: PLN02644 Location: 3071 3-31 883 bp Feature: gene Location: 32228-33691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32777-33389 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32777-33389 bp Feature: gene Location: 33865-33999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CBM_4_9 (pfam02018), I-set (pfam07679), CHU_C (pfam13585), PLN02644 (acetyl-CoA C-acetyltransferase), RVT-Retrons

Seq: QFQQ01000179.1 Citrobacter freundii isolate S2_003_000_R2_13 S2_003_000_R2_scaffold_16933, whole genome shotgun sequence (3156 bp)
Overview 1 RT 1: 3-2515 bp Neighborhood of RT #1 [3, 3135] L1-EN RVT-CRISPR-like Feature: gene Location: 3-149 bp Feature: gene Location: 121-3135 bp Feature: domain Description: L1-EN Location: 379-1099 bp Feature: domain Description: L1-EN Location: 379-1099 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1882-2515 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1882 -2 515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-CRISPR

Seq: QFQQ01000035.1 Citrobacter freundii isolate S2_003_000_R2_13 S2_003_000_R2_scaffold_448, whole genome shotgun sequence (74743 bp)
Overview 1 RT 1: 29279-32649 bp Neighborhood of RT #1 [29279, 32711] RVT-Retrons HTH_XRE RadC Feature: gene Location: 29279-30172 bp Feature: gene Location: 30165-30479 bp Feature: gene Location: 30645-31688 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30882-31440 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 0882-3 1440 bp Feature: gene Location: 31692-31946 bp Feature: domain Description: HTH_XRE Location: 31755-31929 bp Feature: domain Description: HTH_XRE Location: 3 1755-3 1929 bp Feature: gene Location: 32238-32711 bp Feature: domain Description: RadC Location: 32277-32649 bp Feature: domain Description: RadC Location: 3 2277-3 2649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), RadC (pfam04002)