myRT

myRT report for GCA_003244245.1_ASM324424v1

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Seq: QHBY01000210.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_1919, whole genome shotgun sequence (32775 bp)
Overview 1 RT 1: 7261-13448 bp Neighborhood of RT #1 [7261, 13465] TIGR03491 Ugd RVT-GII GIIM Bfd bfr Feature: gene Location: 7261-8895 bp Feature: domain Description: TIGR03491 Location: 7297-8851 bp Feature: domain Description: TIGR03491 Location: 7297-8851 bp Feature: gene Location: 8969-10282 bp Feature: domain Description: Ugd Location: 8984-10208 bp Feature: domain Description: Ugd Location: 8984-1 0208 bp Feature: gene Location: 10610-11752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10718-11375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 071 8-1 1 375 bp Feature: domain Description: GIIM Note: maturase Location: 11459-11678 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 459-1 1 678 bp Feature: gene Location: 12654-12854 bp Feature: domain Description: Bfd Location: 12657-12828 bp Feature: domain Description: Bfd Location: 1 2657-1 2828 bp Feature: gene Location: 12980-13465 bp Feature: domain Description: bfr Location: 12983-13448 bp Feature: domain Description: bfr Location: 1 2983-1 3448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03491 (RecB family nuclease, putative, TM0106 family), Ugd (COG1004), RVT-GII, GIIM (pfam08388), Bfd (COG2906), bfr (TIGR00754)

Seq: QHBY01000212.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_19266, whole genome shotgun sequence (3357 bp)
Overview 1 RT 1: 68-2741 bp Neighborhood of RT #1 [68, 2920] RVT-GII RVT-GII GIIM Feature: gene Location: 68-337 bp Feature: gene Location: 847-1398 bp Feature: gene Location: 1496-2224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784-2171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784-2 171 bp Feature: gene Location: 2258-2920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2261-2468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 61-2 468 bp Feature: domain Description: GIIM Note: maturase Location: 2522-2741 bp Feature: domain Description: GIIM Note: maturase Location: 2 52 2 -2 741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QHBY01000230.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_2114, whole genome shotgun sequence (30108 bp)
Overview 1 RT 1: 3-1964 bp Neighborhood of RT #1 [3, 2062] INT_RitC_C_like RVT-GII DUF222 2A0106 Feature: gene Location: 3-650 bp Feature: domain Description: INT_RitC_C_like Location: 21-570 bp Feature: domain Description: INT_RitC_C_like Location: 21-570 bp Feature: gene Location: 662-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665-797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665-797 bp Feature: gene Location: 898-1347 bp Feature: domain Description: DUF222 Location: 952-1330 bp Feature: domain Description: DUF222 Location: 952-13 3 0 bp Feature: gene Location: 1781-2062 bp Feature: domain Description: 2A0106 Location: 1790-1964 bp Feature: domain Description: 2A0106 Location: 1790-1964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitC_C_like (cd01182), RVT-GII, DUF222 (pfam02720), 2A0106 (TIGR00883)

Seq: QHBY01000386.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_4300, whole genome shotgun sequence (3027 bp)
Overview 1 RT 1: 73-2939 bp Neighborhood of RT #1 [73, 2968] RVT-GII Intron_maturas2 DDE_Tnp_ISAZ013 Feature: gene Location: 73-1854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-1126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334 -1126 bp Feature: domain Description: Intron_maturas2 Location: 1246-1462 bp Feature: domain Description: Intron_maturas2 Location: 124 6-14 62 bp Feature: gene Location: 2363-2968 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 2639-2939 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 2639-2939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_ISAZ013 (pfam07592)

Seq: QHBY01000389.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_43032, whole genome shotgun sequence (2441 bp)
Overview 1 RT 1: 10-1983 bp Neighborhood of RT #1 [10, 2438] UbiH YncE RVT-GII GIIM Feature: gene Location: 10-273 bp Feature: domain Description: UbiH Location: 61-244 bp Feature: domain Description: UbiH Location: 61-244 bp Feature: gene Location: 697-1047 bp Feature: domain Description: YncE Location: 718-1042 bp Feature: domain Description: YncE Location: 718-1042 bp Feature: gene Location: 1125-2438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1695 bp Feature: domain Description: GIIM Note: maturase Location: 1749-1983 bp Feature: domain Description: GIIM Note: maturase Location: 1749-1983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiH (TIGR01984), YncE (COG3391), RVT-GII, GIIM (pfam08388)

Seq: QHBY01000415.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_48624, whole genome shotgun sequence (3044 bp)
Overview 1 RT 1: 84-2323 bp Neighborhood of RT #1 [84, 2490] Nterm_IS4 DDE_Tnp_1 RVT-GII Feature: gene Location: 84-1391 bp Feature: domain Description: Nterm_IS4 Location: 165-459 bp Feature: domain Description: Nterm_IS4 Location: 16 5-459 bp Feature: domain Description: DDE_Tnp_1 Location: 519-777 bp Feature: domain Description: DDE_Tnp_1 Location: 519-777 bp Feature: gene Location: 1417-1596 bp Feature: gene Location: 1597-2490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1858-2323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1858-2323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), RVT-GII

Seq: QHBY01000498.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_6744, whole genome shotgun sequence (2156 bp)
Overview 1 RT 1: 197-1385 bp Neighborhood of RT #1 [197, 1513] RVT-GII GIIM Feature: gene Location: 197-1513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1085 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1385 bp Feature: domain Description: GIIM Note: maturase Location: 117 2-1385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QHBY01000509.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_71647, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 93-1434 bp Neighborhood of RT #1 [93, 1907] RVT_N RVT-GII GIIM Feature: gene Location: 93-1907 bp Feature: domain Description: RVT_N Location: 192-432 bp Feature: domain Description: RVT_N Location: 192-432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48 9-1146 bp Feature: domain Description: GIIM Note: maturase Location: 1203-1434 bp Feature: domain Description: GIIM Note: maturase Location: 1203-1434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QHBY01000570.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_88, whole genome shotgun sequence (3211 bp)
Overview 1 RT 1: 1-2886 bp Neighborhood of RT #1 [1, 2886] RVT-GII zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 1-837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 -709 bp Feature: gene Location: 1086-2606 bp Feature: domain Description: zf-IS66 Location: 1452-1581 bp Feature: domain Description: zf-IS66 Location: 1452-1581 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1638-2475 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1638-2475 bp Feature: gene Location: 2704-2886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: QHBY01000604.1 Pseudonocardiales bacterium isolate RRmetagenome_bin8 25913.lane1.1__paired__contig_9798, whole genome shotgun sequence (3955 bp)
Overview 1 RT 1: 3-3220 bp Neighborhood of RT #1 [3, 3363] degP_htrA_DO RVT-GII GIIM Feature: gene Location: 3-380 bp Feature: domain Description: degP_htrA_DO Location: 57-366 bp Feature: domain Description: degP_htrA_DO Location: 57-366 bp Feature: gene Location: 1071-1316 bp Feature: gene Location: 1894-3363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2233-2929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2233-2929 bp Feature: domain Description: GIIM Note: maturase Location: 2998-3220 bp Feature: domain Description: GIIM Note: maturase Location: 2998-3220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT degP_htrA_DO (TIGR02037), RVT-GII, GIIM (pfam08388)