myRT

myRT report for GCA_003245895.1_ASM324589v1

Download annotations/find similar RTs

Seq: QKBZ01000067.1 Beggiatoa sp. isolate SZUA-411 scaffold_13376, whole genome shotgun sequence (14098 bp)
Overview 1 RT 1: 476-10582 bp Neighborhood of RT #1 [476, 10638] EF-hand_5 EF-hand_5 EF-hand_5 EF-hand_1 EF-hand_1 Dockerin_II Dockerin_II Dockerin_II Dockerin_II Dockerin_II Dockerin_II PRK12309 Dockerin_II EFh Dockerin_II EFh EF-hand_5 EF-hand_5 WGR_DNA_ligase HEAT_2 RVT-Retrons CxxCG_CxxCG_HTH Feature: gene Location: 476-4876 bp Feature: domain Description: EF-hand_5 Location: 1409-1442 bp Feature: domain Description: EF-hand_5 Location: 1 409-1 442 bp Feature: domain Description: EF-hand_5 Location: 1793-1835 bp Feature: domain Description: EF-hand_5 Location: 1 793-1 835 bp Feature: domain Description: EF-hand_5 Location: 2081-2114 bp Feature: domain Description: EF-hand_5 Location: 2081 -21 1 4 bp Feature: domain Description: EF-hand_1 Location: 2618-2675 bp Feature: domain Description: EF-hand_1 Location: 261 8-2675 bp Feature: domain Description: EF-hand_1 Location: 2777-2837 bp Feature: domain Description: EF-hand_1 Location: 2777-2837 bp Feature: domain Description: Dockerin_II Location: 2924-3062 bp Feature: domain Description: Dockerin_II Location: 2924-3062 bp Feature: domain Description: Dockerin_II Location: 3257-3305 bp Feature: domain Description: Dockerin_II Location: 3257-3305 bp Feature: domain Description: Dockerin_II Location: 3320-3362 bp Feature: domain Description: Dockerin_II Location: 3320-3362 bp Feature: domain Description: Dockerin_II Location: 3443-3491 bp Feature: domain Description: Dockerin_II Location: 3443-3491 bp Feature: domain Description: Dockerin_II Location: 3506-3548 bp Feature: domain Description: Dockerin_II Location: 3506-3548 bp Feature: domain Description: Dockerin_II Location: 3623-3677 bp Feature: domain Description: Dockerin_II Location: 3623-3677 bp Feature: domain Description: PRK12309 Location: 3683-3809 bp Feature: domain Description: PRK1 2309 Location: 3683-3809 bp Feature: domain Description: Dockerin_II Location: 3809-3857 bp Feature: domain Description: Dockerin_II Location: 3809-3857 bp Feature: domain Description: EFh Location: 3878-4040 bp Feature: domain Description: EFh Location: 3878-4040 bp Feature: domain Description: Dockerin_II Location: 4070-4121 bp Feature: domain Description: Dockerin_II Location: 4070-41 21 bp Feature: domain Description: EFh Location: 4259-4412 bp Feature: domain Description: EFh Location: 4259-441 2 bp Feature: domain Description: EF-hand_5 Location: 4460-4496 bp Feature: domain Description: EF-hand_5 Location: 4460-4496 bp Feature: domain Description: EF-hand_5 Location: 4589-4622 bp Feature: domain Description: EF-hand_5 Location: 4589-4622 bp Feature: gene Location: 5077-8295 bp Feature: domain Description: WGR_DNA_ligase Location: 5098-5317 bp Feature: domain Description: WGR_DNA_ligase Location: 5098-531 7 bp Feature: domain Description: HEAT_2 Location: 5539-5740 bp Feature: domain Description: HEAT_2 Location: 5539-5740 bp Feature: gene Location: 8306-9715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8852-9470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8852-9470 bp Feature: gene Location: 9740-9961 bp Feature: gene Location: 10177-10638 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 10201-10582 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 1 0201 -1 0582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EF-hand_5 (pfam13202), EF-hand_1 (pfam00036), Dockerin_II (cd14254), PRK12309 (transaldolase), EFh (smart00054), WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), RVT-Retrons

Seq: QKBZ01000292.1 Beggiatoa sp. isolate SZUA-411 scaffold_9547, whole genome shotgun sequence (16948 bp)
Overview 1 RT 1: 3-2851 bp Neighborhood of RT #1 [3, 2851] RVT-GII GIIM glgC Feature: gene Location: 3-911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-555 bp Feature: domain Description: GIIM Note: maturase Location: 636-861 bp Feature: domain Description: GIIM Note: maturase Location: 636-861 bp Feature: gene Location: 1022-2293 bp Feature: domain Description: glgC Location: 1040-2285 bp Feature: domain Description: glgC Location: 1040-2 2 85 bp Feature: gene Location: 2627-2851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT glgC (TIGR02091), RVT-GII, GIIM (pfam08388)