myRT

myRT report for GCA_003248545.1_ASM324854v1

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Seq: QFOR01000035.1 Shinella sp. isolate S2_006_000_R2_67 S2_006_000_R2_scaffold_1096, whole genome shotgun sequence (54823 bp)
Overview 1 RT 1: 43405-49302 bp Neighborhood of RT #1 [43405, 49302] DDE_5 COG3293 RVT-UNC FRG Feature: gene Location: 43405-44787 bp Feature: domain Description: DDE_5 Location: 43516-44275 bp Feature: domain Description: DDE_5 Location: 4351 6-44275 bp Feature: gene Location: 44826-45545 bp Feature: domain Description: COG3293 Location: 44925-45189 bp Feature: domain Description: COG3293 Location: 44925-451 89 bp Feature: gene Location: 45544-46878 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 45913-46429 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4591 3-46429 bp Feature: gene Location: 47251-48411 bp Feature: domain Description: FRG Location: 47635-47917 bp Feature: domain Description: FRG Location: 47635-4791 7 bp Feature: gene Location: 48964-49302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), COG3293 (Transposase ), RVT-UG11/RVT-CRISPR(RVT-UNC), FRG (smart00901)

Seq: QFOR01000002.1 Shinella sp. isolate S2_006_000_R2_67 S2_006_000_R2_scaffold_30, whole genome shotgun sequence (304906 bp)
Overview 1 RT 1: 171009-177663 bp Neighborhood of RT #1 [171009, 177707] XerC RVT-Retrons SUL1 APS_reductase Feature: gene Location: 171009-171524 bp Feature: gene Location: 171596-172573 bp Feature: domain Description: XerC Location: 171689-172496 bp Feature: domain Description: XerC Location: 171689-172 496 bp Feature: gene Location: 173947-174993 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 174265-174796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1742 65-174796 bp Feature: gene Location: 175195-176688 bp Feature: domain Description: SUL1 Location: 175261-176653 bp Feature: domain Description: SUL1 Location: 1752 61-176653 bp Feature: gene Location: 176964-177707 bp Feature: domain Description: APS_reductase Location: 177087-177663 bp Feature: domain Description: APS_reductase Location: 177087-177663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), RVT-Retrons, SUL1 (COG0659), APS_reductase (TIGR02055)