myRT

myRT report for GCA_003251775.1_ASM325177v1

Download annotations/find similar RTs

Seq: QKEK01000166.1 Clostridia bacterium isolate SZUA-474 scaffold_31883, whole genome shotgun sequence (9336 bp)
Overview 1 RT 1: 34-4794 bp Neighborhood of RT #1 [34, 4794] RimL DUF3795 RVT-GII GIIM RimL Feature: gene Location: 34-489 bp Feature: domain Description: RimL Location: 121-403 bp Feature: domain Description: RimL Location: 1 21 -403 bp Feature: gene Location: 576-1124 bp Feature: domain Description: DUF3795 Location: 594-999 bp Feature: domain Description: DUF3795 Location: 594-999 bp Feature: gene Location: 1560-3035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1977-2595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 977-2595 bp Feature: domain Description: GIIM Note: maturase Location: 2649-2877 bp Feature: domain Description: GIIM Note: maturase Location: 2649-2877 bp Feature: gene Location: 3513-4040 bp Feature: domain Description: RimL Location: 3528-4026 bp Feature: domain Description: RimL Location: 3528-4026 bp Feature: gene Location: 4213-4794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RimL (COG1670), DUF3795 (pfam12675)

Seq: QKEK01000045.1 Clostridia bacterium isolate SZUA-474 scaffold_75082, whole genome shotgun sequence (5312 bp)
Overview 1 RT 1: 278-5310 bp Neighborhood of RT #1 [278, 5310] COG2433 CitA GGDEF EAL RVT-GII group_II_RT_mat Feature: gene Location: 278-700 bp Feature: domain Description: COG2433 Location: 299-683 bp Feature: domain Description: COG2 433 Location: 2 99-683 bp Feature: gene Location: 924-2993 bp Feature: domain Description: CitA Location: 1425-1656 bp Feature: domain Description: CitA Location: 142 5-1656 bp Feature: domain Description: GGDEF Location: 1665-2139 bp Feature: domain Description: GGDEF Location: 1665-2 139 bp Feature: domain Description: EAL Location: 2202-2880 bp Feature: domain Description: EAL Location: 2 2 02 -2 880 bp Feature: gene Location: 3944-4345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3965-4337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3965-4337 bp Feature: gene Location: 4389-4751 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4572-4746 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4572 -4746 bp Feature: gene Location: 5101-5310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), CitA (COG3290), GGDEF (TIGR00254), EAL (smart00052)

Seq: QKEK01000052.1 Clostridia bacterium isolate SZUA-474 scaffold_86121, whole genome shotgun sequence (4903 bp)
Overview 1 RT 1: 3469-4832 bp Neighborhood of RT #1 [3469, 4900] PRK12434 RVT-GII Feature: gene Location: 3469-4206 bp Feature: domain Description: PRK12434 Location: 3472-4204 bp Feature: domain Description: PRK1243 4 Location: 3 472-4204 bp Feature: gene Location: 4316-4588 bp Feature: gene Location: 4742-4900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4748-4832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4748-483 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12434 (tRNA pseudouridine(38-40) synthase TruA), RVT-GII