myRT

myRT report for GCA_003258295.1_ASM325829v1

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Seq: QKYN01000089.1 Streptacidiphilus pinicola strain MMS16-CNU450 M1_S2_L001_R1_001__paired__contig_107, whole genome shotgun sequence (66200 bp)
Overview 1 RT 1: 54818-59682 bp Neighborhood of RT #1 [54818, 59768] Tra5 RVT-GII GIIM YybH HTH_LUXR Feature: gene Location: 54818-55822 bp Feature: domain Description: Tra5 Location: 55079-55655 bp Feature: domain Description: Tra5 Location: 55079-55655 bp Feature: gene Location: 56600-57040 bp Feature: gene Location: 56996-57916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57002-57488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57002-57488 bp Feature: domain Description: GIIM Note: maturase Location: 57560-57761 bp Feature: domain Description: GIIM Note: maturase Location: 57560-57761 bp Feature: gene Location: 58120-58551 bp Feature: domain Description: YybH Location: 58201-58537 bp Feature: domain Description: YybH Location: 58201 -58537 bp Feature: gene Location: 58626-59768 bp Feature: domain Description: HTH_LUXR Location: 59523-59682 bp Feature: domain Description: HTH_LUXR Location: 59523-59682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), YybH (COG4319), HTH_LUXR (smart00421)

Seq: QKYN01000071.1 Streptacidiphilus pinicola strain MMS16-CNU450 M1_S2_L001_R1_001__paired__contig_76, whole genome shotgun sequence (44171 bp)
Overview 1 RT 1: 33773-38431 bp Neighborhood of RT #1 [33773, 38431] MLTR_LBD COG3464 RVT-GII GIIM HTH_23 COG3464 Feature: gene Location: 33773-33901 bp Feature: domain Description: MLTR_LBD Location: 33782-33884 bp Feature: domain Description: MLTR_LBD Location: 33782 -33884 bp Feature: gene Location: 34126-34956 bp Feature: domain Description: COG3464 Location: 34195-34900 bp Feature: domain Description: COG3464 Location: 34195-34900 bp Feature: gene Location: 35470-36942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35806-36490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35806-36490 bp Feature: domain Description: GIIM Note: maturase Location: 36559-36772 bp Feature: domain Description: GIIM Note: maturase Location: 36559-36772 bp Feature: gene Location: 37103-37924 bp Feature: domain Description: HTH_23 Location: 37202-37304 bp Feature: domain Description: HTH_2 3 Location: 372 02 -37304 bp Feature: domain Description: COG3464 Location: 37658-37919 bp Feature: domain Description: COG3464 Location: 37658-37919 bp Feature: gene Location: 37934-38431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MLTR_LBD (pfam17765), COG3464 (Transposase ), RVT-GII, GIIM (pfam08388), HTH_23 (pfam13384)