myRT

myRT report for GCA_003259175.1_ASM325917v1

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Seq: QGOK01000026.1 Marinomonas sp. DSL-35 contig26, whole genome shotgun sequence (66244 bp)
Overview 1 RT 1: 60967-66049 bp Neighborhood of RT #1 [60967, 66049] groES groEL RVT_N RVT-GII GIIM HNHc Feature: gene Location: 60967-61257 bp Feature: domain Description: groES Location: 60970-61252 bp Feature: domain Description: groES Location: 60970-61 252 bp Feature: gene Location: 61316-62959 bp Feature: domain Description: groEL Location: 61322-62939 bp Feature: domain Description: groEL Location: 61 322-62939 bp Feature: gene Location: 64040-65695 bp Feature: RT Description: RVT_N Location: 64094-64331 bp Feature: RT Description: RVT_N Location: 64094-64331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64382-65027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64382-65027 bp Feature: domain Description: GIIM Note: maturase Location: 65081-65312 bp Feature: domain Description: GIIM Note: maturase Location: 65081 -6531 2 bp Feature: domain Description: HNHc Note: nucleases Location: 65525-65684 bp Feature: domain Description: HNHc Note: nucleases Location: 65525-65684 bp Feature: gene Location: 65801-66049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QGOK01000036.1 Marinomonas sp. DSL-35 contig36, whole genome shotgun sequence (37533 bp)
Overview 1 RT 1: 338-3798 bp Neighborhood of RT #1 [338, 3818] RVT-GII GIIM degP_htrA_DO Feature: gene Location: 338-1672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602 -12 2 3 bp Feature: domain Description: GIIM Note: maturase Location: 1271-1490 bp Feature: domain Description: GIIM Note: maturase Location: 12 71-1490 bp Feature: gene Location: 1857-2060 bp Feature: gene Location: 2409-3818 bp Feature: domain Description: degP_htrA_DO Location: 2496-3798 bp Feature: domain Description: degP_htrA_DO Location: 2 496-3798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT degP_htrA_DO (TIGR02037), RVT-GII, GIIM (pfam08388)

Seq: QGOK01000008.1 Marinomonas sp. DSL-35 contig8, whole genome shotgun sequence (185090 bp)
Overview 1 RT 1: 166779-175220 bp Neighborhood of RT #1 [166779, 175366] PRK10676 Arm-DNA-bind_3 INT_P4_C RVT-Retrons AAA_15 TrwC TraA_Ti Feature: gene Location: 166779-167609 bp Feature: domain Description: PRK10676 Location: 166851-167595 bp Feature: domain Description: PRK10676 Location: 166851-167595 bp Feature: gene Location: 168105-169313 bp Feature: domain Description: Arm-DNA-bind_3 Location: 168120-168384 bp Feature: domain Description: Arm-DNA-bind_3 Location: 168120-1683 84 bp Feature: domain Description: INT_P4_C Location: 168747-169224 bp Feature: domain Description: INT_P4_C Location: 168747-169224 bp Feature: gene Location: 169326-170456 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169509-170064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169509-170064 bp Feature: gene Location: 170573-172792 bp Feature: domain Description: AAA_15 Location: 170576-171578 bp Feature: domain Description: AAA_15 Location: 170576-171578 bp Feature: gene Location: 172841-175366 bp Feature: domain Description: TrwC Location: 172874-173684 bp Feature: domain Description: TrwC Location: 172874-173 684 bp Feature: domain Description: TraA_Ti Location: 173753-175220 bp Feature: domain Description: TraA_Ti Location: 173 753 -175220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10676 (DNA-binding transcriptional regulator ModE; Provisional), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-Retrons, AAA_15 (pfam13175), TrwC (pfam08751), TraA_Ti (TIGR02768)