myRT

myRT report for GCA_003259435.1_ASM325943v1

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Seq: QLMA01000005.1 Chitinophaga dinghuensis strain DSM 29821 Ga0181032_105, whole genome shotgun sequence (638000 bp)
Overview 1 RT 1: 38218-46470 bp 2 RT 2: 445837-450902 bp Neighborhood of RT #1 [38218, 49220] MET2 CarbopepD_reg_2 ligand_gated_channel RVT-Retrons WGR_DNA_ligase HEAT_2 Neighborhood of RT #2 [445837, 450902] TraG-D_C CarbopepD_reg_2 RVT-UG2 Feature: gene Location: 38218-39231 bp Feature: domain Description: MET2 Location: 38230-39223 bp Feature: domain Description: MET2 Location: 38230-39223 bp Feature: gene Location: 39322-42198 bp Feature: domain Description: CarbopepD_reg_2 Location: 39415-39664 bp Feature: domain Description: CarbopepD_reg_2 Location: 3941 5-39664 bp Feature: domain Description: ligand_gated_channel Location: 39724-42175 bp Feature: domain Description: ligand_gated_channel Location: 39724-421 75 bp Feature: gene Location: 42366-44021 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43029-43641 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43029-43641 bp Feature: gene Location: 44275-45912 bp Feature: gene Location: 45930-49220 bp Feature: domain Description: WGR_DNA_ligase Location: 45948-46167 bp Feature: domain Description: WGR_DNA_ligase Location: 45948-461 67 bp Feature: domain Description: HEAT_2 Location: 46305-46470 bp Feature: domain Description: HEAT_2 Location: 46305-46470 bp Feature: gene Location: 445837-446055 bp Feature: domain Description: TraG-D_C Location: 445849-446017 bp Feature: domain Description: TraG-D_C Location: 445849-44601 7 bp Feature: gene Location: 446355-446816 bp Feature: domain Description: CarbopepD_reg_2 Location: 446430-446607 bp Feature: domain Description: CarbopepD_reg_2 Location: 446430-446607 bp Feature: gene Location: 447155-448783 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 447392-448328 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 447392-448328 bp Feature: gene Location: 449214-450425 bp Feature: gene Location: 450693-450902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MET2 (COG2021), CarbopepD_reg_2 (pfam13715), ligand_gated_channel (cd01347), RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), TraG-D_C (pfam12696), RVT-UG2

Seq: QLMA01000008.1 Chitinophaga dinghuensis strain DSM 29821 Ga0181032_108, whole genome shotgun sequence (476750 bp)
Overview 1 RT 1: 257377-263872 bp Neighborhood of RT #1 [257377, 263872] group_II_RT_mat RVT-UG6 SieB Feature: gene Location: 257377-257997 bp Feature: gene Location: 258263-259165 bp Feature: gene Location: 259162-262431 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 259261-259528 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 592 61-2 5952 8 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 259816-260275 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 2 59816-2 602 75 bp Feature: gene Location: 262997-263611 bp Feature: domain Description: SieB Location: 263060-263489 bp Feature: domain Description: SieB Location: 2 63060-2 63489 bp Feature: gene Location: 263744-263872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG6, SieB (pfam14163)