myRT

myRT report for GCA_003260415.1_ASM326041v1

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Seq: QHCK01000002.1 Pseudomonas aeruginosa strain AR_0447 AR_447.contig.1_1, whole genome shotgun sequence (7141746 bp)
Overview 1 RT 1: 4392496-4402802 bp 2 RT 2: 4419060-4427898 bp Neighborhood of RT #1 [4392496, 4402804] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [4419060, 4427927] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 4392496-4393617 bp Feature: domain Description: COG3177 Location: 4392514-4393606 bp Feature: domain Description: COG31 77 Location: 439251 4-4393606 bp Feature: gene Location: 4393876-4394013 bp Feature: gene Location: 4394341-4396026 bp Feature: RT Description: RVT_N Location: 4394398-4394638 bp Feature: RT Description: RVT_N Location: 4394398-4394638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4394686-4395322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4394686-4395322 bp Feature: domain Description: GIIM Note: maturase Location: 4395376-4395607 bp Feature: domain Description: GIIM Note: maturase Location: 4395376-4395607 bp Feature: domain Description: HNH Note: nucleases Location: 4395859-4395997 bp Feature: domain Description: HNH Note: nucleases Location: 4395859-4395997 bp Feature: gene Location: 4397107-4400844 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4397215-4397872 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 439721 5-4397872 bp Feature: domain Description: PRK09776 Location: 4398085-4398556 bp Feature: domain Description: PRK09776 Location: 4398085-4398556 bp Feature: domain Description: PAS Location: 4398613-4399138 bp Feature: domain Description: PAS Location: 439861 3-43991 38 bp Feature: domain Description: PRK10060 Location: 4399147-4400794 bp Feature: domain Description: PRK1 0060 Location: 43991 47-4400794 bp Feature: gene Location: 4400951-4402804 bp Feature: domain Description: PRK05658 Location: 4400963-4402802 bp Feature: domain Description: PRK05658 Location: 4400963-4402802 bp Feature: gene Location: 4419060-4420274 bp Feature: domain Description: PRK10770 Location: 4419072-4420266 bp Feature: domain Description: PRK1 0770 Location: 441 9072-4420266 bp Feature: gene Location: 4420333-4423122 bp Feature: domain Description: LptD Location: 4420528-4423108 bp Feature: domain Description: LptD Location: 4420528-44231 08 bp Feature: gene Location: 4423255-4424967 bp Feature: RT Description: RVT_N Location: 4423312-4423555 bp Feature: RT Description: RVT_N Location: 442331 2-4423555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4423600-4424236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4423600-4424236 bp Feature: domain Description: YkfC Location: 4424446-4424596 bp Feature: domain Description: YkfC Location: 4424446-4424596 bp Feature: domain Description: HNH Note: nucleases Location: 4424773-4424911 bp Feature: domain Description: HNH Note: nucleases Location: 4424773-442491 1 bp Feature: gene Location: 4426240-4427256 bp Feature: domain Description: COG3178 Location: 4426243-4427242 bp Feature: domain Description: COG31 78 Location: 4426243-4427242 bp Feature: gene Location: 4427253-4427927 bp Feature: domain Description: NTP_transferase_like_1 Location: 4427259-4427898 bp Feature: domain Description: NTP_transferase_like_1 Location: 4427259-4427898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)